Man pages for antoine186/convSig
Mutational Process Inference via Expectation Maximisation
| conv_create | Constructs the sparse approximation of h(T_i * F_i) |
| exp_transform | Performs the exponential transform on mutational count data |
| icgc2mut | Converts an ICGC file into a mutation file |
| icgc_curate | Sorts and removes duplicate entries in a mutation file output... |
| icgc_sort | #' Loads an example ICGC file #' #' @return A valid ICGC... |
| linreg_solver | Solves the |T * Feature - theta|^2 = 0 linear regression... |
| mut_count | Computes the frequency of each possible trinucleotide or... |
| mut_process35 | A function that treats the mutation input file and reorders... |
| readfast | Read in the reference genome fasta file |
| readmut | Read in the mutation input file |
| read_vcf | Read in the vcf file |
| relu_transform | Performs the ReLU transform on mutational count data |
| vcf2mut | Read vcf files and processes them / User correct assembly |
