Files in apear9/SSNdesign

An R Package for Optimal and Adaptive Sampling Designs on Stream Networks

R/CPDOptimality.R R/CPOptimality.R R/Doptimality.R R/EDOptimality.R R/EKOptimality.R R/Find.Tribs.R R/KOptimality.R R/OneSampPerSeg.R R/ProfLike.R R/SRS.sample.R R/SSNDesign.R R/SameSegmentClusters.sample.R R/SimulateOnSSN2.R R/SimulateOnSSN_minimal.R R/Stream.Network.Samples.R R/anum.R R/anyPreds.R R/calculateShreveStreamOrder.R R/calculateShreveStreamOrderAndAFVs.R R/closestToZero.R R/collapseAndReorderEdgelist.R R/constructLogNormalPriors.R R/constructSpaceFillingDesign.R R/constructTotalMatrix.R R/correctSystematicDesign.R R/createBinaryID.R R/createSSNList.R R/design.validation.covariance.parms.estimation.R R/design.validation.covariance.parms.estimation_.R R/design.validation.fixed.effects.estimation.R R/design.validation.fixed.effects.estimation_.R R/design.validation.predictions.R R/design.validation.predictions_.R R/drawStreamNetworkSamples.R R/evaluateFixedDesigns.R R/evolveGRTSOverTime.R R/evolveRandOverTime.R R/extractExpectedFisherInformation.R R/extractShreveAndAFVs.R R/extractStreamEdgeCovariates.R R/fillSpaceAtIntervals.R R/find.seg.below.R R/find.segment.lengths.R R/first.loc.R R/generateSites.R R/getBIDtables.R R/getCalculatedCovMatrix.R R/getCalculatedSE.R R/getCovMat.R R/getExpectedCovMatrix.R R/getExpectedSE.R R/getImportantMatrices.obs.R R/getImportantMatrices.obs2.R R/getImportantMatrices.pxo.R R/getLikelihoodProfile.R R/getStreamDistMatsInOrder.R R/getStreamDistMatsInOrder.predsxobs.R R/glmssn1_minimal.R R/glmssn_minimal.R R/goUpOneLevelInSSNPath.R R/hardCoreDesign.R R/identifyObsxPredsABMatrices.R R/importStreams.R R/isSSN.R R/locatePointOnEdge.R R/m2LL.stream1.R R/mae.R R/matchBIDridToRownames.R R/me.R R/ndpoints.R R/nnetwork.R R/nppoints.R R/optimiseSSNDesign.R R/overwriteBeta.R R/overwriteThetas.R R/plot-method.R R/plotTrace.R R/predict.glmssn_minimal.R R/replication.function.R R/retrieveDistAndConnMat.R R/rmse.R R/searchAllDesigns.R R/sequentialCPOptimality.R R/sequentialDOptimality.R R/sequentialEDOptimality.R R/simulateFromSSNM.R R/spaceFilling.R R/spaceFillingMaxiMin.R R/spaceFillingMorrisMitchell.R R/spliceSSNSites.R R/splitSSNSites.R R/ssn2DataFrames.R R/ssndesign2DF.R R/stableInverse.R R/stds01.R R/stdsGs.R R/subsetByLOCID.R R/subsetByPID.R R/subsetPreds.R R/subsetSSN2.R R/subsetSSNbyID.R R/systematicDesign.R R/tempPath.R R/transformSSNVars.R R/unpackExampleData.R R/validateDesigns.R R/writeStreams.R README.md man/CPDOptimality.Rd man/CPOptimality.Rd man/DOptimality.Rd man/EDOptimality.Rd man/EKOptimality.Rd man/Find.Tribs.Rd man/KOptimality.Rd man/OneSampPerSeg.Rd man/SRS.sample.Rd man/SSNDesign.Rd man/SameSegmentClusters.sample.Rd man/SimulateOnSSN2.Rd man/Stream.Network.Samples.Rd man/calculateShreveStreamOrder.Rd man/calculateShreveStreamOrderAndAFVs.Rd man/constructLogNormalPriors.Rd man/constructSpaceFillingDesign.Rd man/drawStreamNetworkSamples.Rd man/evaluateFixedDesigns.Rd man/evolveGRTSOverTime.Rd man/evolveRandOverTime.Rd man/extractExpectedFisherInformation.Rd man/extractStreamEdgeCovariates.Rd man/find.seg.below.Rd man/find.segment.lengths.Rd man/first.loc.Rd man/generateSites.Rd man/getBIDtables.Rd man/getCalculatedCovMatrix.Rd man/getCalculatedSE.Rd man/getCovMat.Rd man/getExpectedCovMatrix.Rd man/getExpectedSE.Rd man/getLikelihoodProfile.Rd man/getStreamDistMatInOrder.Rd man/hardCoreDesign.Rd man/importStreams.Rd man/ndpoints.Rd man/nnetwork.Rd man/nppoints.Rd man/optimiseSSNDesign.Rd man/plot.ssndesign.Rd man/sequentialCPOptimality.Rd man/sequentialDOptimality.Rd man/sequentialEDOptimality.Rd man/simulateFromSSNM.Rd man/spaceFillingMaxiMin.Rd man/spaceFillingMorrisMitchell.Rd man/spliceSSNSites.Rd man/splitSSNSites.Rd man/ssn2DataFrames.Rd man/stdsGs.Rd man/subsetByID.Rd man/subsetPreds.Rd man/systematicDesign.Rd man/tempPath.Rd man/transformSSNVars.Rd man/unpackExampleData.Rd