Files in aquaMetrics/rict
River Invertebrate Classification Tool (RICT)
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/calc-temperatures.R
R/classification-functions.R
R/compare-probability.R
R/compare-test.R
R/demo-eqr-values.R
R/demo-gis-values-log.R
R/demo-iom-observed-values.R
R/demo-ni-observed-values.R
R/demo-observed-values.R
R/helper-functions.R
R/osg-parse.R
R/prediction-functions.R
R/rict-app.R
R/rict-classify.R
R/rict-compare.R
R/rict-predict.R
R/rict-validate.R
R/rict.R
R/single-year-classification.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
data/demo_eqr_values.rda
data/demo_gis_values_log.rda
data/demo_iom_observed_values.rda
data/demo_ni_observed_values.rda
data/demo_observed_values.rda
inst/extdat/DFCOEFF_NI.DAT
inst/extdat/DFMEAN_NI_RALPH.DAT
inst/extdat/EndGrp_AssessScores.csv
inst/extdat/EndGrp_AssessScoresNI.csv
inst/extdat/TAXA_AB_APR_PRAB.csv
inst/extdat/adjust-params-ntaxa-aspt.csv
inst/extdat/adjustParams_ntaxa_aspt.csv
inst/extdat/air-temp-grid.csv
inst/extdat/chi_square.csv
inst/extdat/compare-data/rict-input-1-upstream-compare.csv
inst/extdat/compare-data/rict-input-2-downstream-compare.csv
inst/extdat/df-coeff-gb-685.DAT
inst/extdat/df-coeff-iom.DAT
inst/extdat/df-mean-gb-685.DAT
inst/extdat/df-mean-iom.DAT
inst/extdat/discriminant-function-coefficients-model-44.csv
inst/extdat/discriminant-function-model-44.csv
inst/extdat/end-group-assess-scores-iom.csv
inst/extdat/end-group-means-discriminant-scores-model-44.csv
inst/extdat/end-group-means-model-44.csv
inst/extdat/end-group-means.csv
inst/extdat/end-grp-assess-scores.csv
inst/extdat/environmental-test-data-model-44-log.csv
inst/extdat/expected-unadjusted-biotic-scores-model-44.csv
inst/extdat/images/gammarus-pulex.png
inst/extdat/images/rict_logo.png
inst/extdat/input-file-data-to-use-multi-year-iom.csv
inst/extdat/input-file-single-year-gb.csv
inst/extdat/input-file-template.xlsx
inst/extdat/input-file-to-test-iom-against-fortran-outputs.csv
inst/extdat/logo/rict-logo.R
inst/extdat/model-m1-gb-10000-simulated-eqr-values-whpt-ntaxa-spring-for-test-sites.csv
inst/extdat/new-input-file-data-to-use-multi-year-1.csv
inst/extdat/ni-model-1-test-data.csv
inst/extdat/rict-all-indices-predictions.csv
inst/extdat/rict-gb-taxa-prediction.csv
inst/extdat/rict-ni-all-indices-predictions.csv
inst/extdat/rict-ni-predictions.csv
inst/extdat/rict-ni-taxa-prediction.csv
inst/extdat/rict-summer-single-year-gb.csv
inst/extdat/test-all-seasons-iom-090723.csv
inst/extdat/test-data-end-point-means.csv
inst/extdat/test-data-model-1.csv
inst/extdat/test-data-single-site-multi-year.csv
inst/extdat/test-expected-end-group-model-44.csv
inst/extdat/test-rict-compare.csv
inst/extdat/test-sites-gb-model-44-classification-draft.csv
inst/extdat/test-sites-gb-model-44-classification.csv
inst/extdat/validation-class-multi-year.csv
inst/extdat/validation-class-single-year.csv
inst/extdat/validation-classification-iom-predictions.csv
inst/extdat/validation-classification-iom-single-year.csv
inst/extdat/validation-classification-ni-single-year-summer.csv
inst/extdat/validation-classification-ni-single-year.csv
inst/extdat/validation-input-single-year.csv
inst/extdat/validation-prediction-multi-year.csv
inst/extdat/validation-rules.csv
inst/extdat/x-103-end-group-means-formatted-iom.csv
inst/extdat/x-103-end-group-means-formatted-jdb-17-dec-2019.csv
inst/shiny_apps/rictapp/app.R
inst/shiny_apps/rictapp/rsconnect/shinyapps.io/ecodata/rictapp.dcf
inst/shiny_apps/rictapp/rsconnect/shinyapps.io/rictapplications/rictapp.dcf
man/compare_probability.Rd
man/compare_test.Rd
man/demo_eqr_values.Rd
man/demo_gis_values_log.Rd
man/demo_iom_observed_values.Rd
man/demo_ni_observed_values.Rd
man/demo_observed_values.Rd
man/figures/rict_logo.png
man/osg_parse.Rd
man/rict.Rd
man/rict_app.Rd
man/rict_classify.Rd
man/rict_compare.Rd
man/rict_predict.Rd
man/rict_validate.Rd
rict.Rproj
tests/testthat.R
tests/testthat/test-lintr.R
tests/testthat/test-rict-classify.R
tests/testthat/test-rict-compare.R
tests/testthat/test-rict-predict.R
tests/testthat/test-rict-validate.R
tests/testthat/test-rict.R
vignettes/.gitignore
vignettes/functional-specification.Rmd
vignettes/functional-specification.md
vignettes/images/application-flow-chart.png
vignettes/images/rict-azure.png
vignettes/images/rict-classification-1.png
vignettes/images/rict-classification-10.png
vignettes/images/rict-classification-11.png
vignettes/images/rict-classification-12.png
vignettes/images/rict-classification-13.png
vignettes/images/rict-classification-2.png
vignettes/images/rict-classification-3.png
vignettes/images/rict-classification-4.png
vignettes/images/rict-classification-5.png
vignettes/images/rict-classification-6.png
vignettes/images/rict-classification-7.png
vignettes/images/rict-classification-8.png
vignettes/images/rict-classification-9.png
vignettes/images/rict-classification-model-44.png
vignettes/images/rict-classification.png
vignettes/images/rict-compare.png
vignettes/images/rict-discriminant-function-score.png
vignettes/images/rict-environmental-suitability.png
vignettes/images/rict-mahalanobis-distance.png
vignettes/images/rict-prediction-azure-1.png
vignettes/images/rict-prediction-azure-2.png
vignettes/images/rict-prediction-azure-3.png
vignettes/images/rict-prediction-azure-4.png
vignettes/images/rict-prediction-model-44.png
vignettes/images/rict-prediction-of-index.png
vignettes/images/rict-prediction-of-taxa.png
vignettes/images/rict-prediction.png
vignettes/images/rict-probability-end-group.png
vignettes/images/rict_logo.png
vignettes/images/user-guide/options.png
vignettes/images/user-guide/rict-website-compare.png
vignettes/images/user-guide/rict-website.png
vignettes/images/user-guide/taxa-download-excel-1.jpg
vignettes/images/user-guide/taxa-download-excel-1.png
vignettes/images/user-guide/taxa-download-excel-2.jpg
vignettes/images/user-guide/taxa-download-excel-2.png
vignettes/images/user-guide/taxa-download-excel-3.jpg
vignettes/images/user-guide/taxa-download-excel-3.png
vignettes/images/user-guide/taxa-download-excel-4.jpg
vignettes/images/user-guide/taxa-download-excel-4.png
vignettes/tech-demo-temperature-change.Rmd
vignettes/tech-demo-temperature-change.md
vignettes/template.docx
vignettes/user-guide.Rmd
vignettes/user-guide.md
