Man pages for arcolombo/Rccdashboard
Assess Differential Gene Expression Experiments with ERCC Controls
| annotLODR | Annotate signal-abundance and ratio-abundance plots with LODR |
| dynRangePlot | Produce signal-abundance plot to evaluate dynamic range |
| ERCC | ERCC data |
| ERCCDef | ERCCDef dataframe |
| ERCCMix1and2 | ERCCMix1and2 dataframe |
| erccROC | Produce Receiver Operator Characteristic (ROC) Curves and AUC... |
| estLODR | Estimate Limit of Detection of Ratios (LODR) |
| est_r_m | Estimate the mRNA fraction differences for the pair of... |
| geneExprTest | Prepare differential expression testing results for spike-in... |
| initDat | Initialize the exDat list |
| maSignal | Generate MA plots with or without annotation using LODR... |
| MET.CTL.countDat | Rat toxicogenomics count data |
| MET.CTL.totalReads | Rat toxicogenomics total read data |
| multiplot | Multiplot function from R cookbook |
| runDashboard | Run default erccdashboard analysis of ERCC control ratio... |
| saveERCCPlots | Save erccdashboard plots to a pdf file |
| SEQC.Example | Example data from SEQC project for erccdashboard analysis |
| UHRR.HBRR.arrayDat | UHRR and HBRR Illumina BeadArray data |
| UHRR.HBRR.countDat | UHRR and HBRR RNA-Seq Illumina count data |
| UHRR.HBRR.totalReads | UHRR and HBRR sample total read data |
