Man pages for argymeg/breakclone
Estimating clonal relatedness probability between tumour pairs
| calculateRelatednessCn | Calculate relatedness scores for paired tumours |
| calculateRelatednessMutations | Calculate relatedness scores for paired tumours |
| inferPairs | Infer tumour pairs from segment table |
| makeReferenceCN | Generate reference distribution from copy number data |
| makeReferenceMutations | Generate reference distribution from mutation data |
| plotScoresDensity | Plot the reference and pair distributions. |
| plotScoresHistogram | Plot the reference and pair histograms. |
| readAlleleSpecific | Read allele-specific copy number data from a directory |
| readVCFCn | Read in copy number VCF files |
| readVCFMutations | Read in mutation VCF files |
