arodri7/SAIGE-GPU
Efficiently controlling for case-control imbalance and sample relatedness in single-variant assoc tests (SAIGE) and controlling for sample relatedness in region-based assoc tests in large cohorts and biobanks (SAIGE-GENE)

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arodri7/SAIGE-GPU: Efficiently controlling for case-control imbalance and sample relatedness in single-variant assoc tests (SAIGE) and controlling for sample relatedness in region-based assoc tests in large cohorts and biobanks (SAIGE-GENE)
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Man pages for arodri7/SAIGE-GPU
Efficiently controlling for case-control imbalance and sample relatedness in single-variant assoc tests (SAIGE) and controlling for sample relatedness in region-based assoc tests in large cohorts and biobanks (SAIGE-GENE)

createSparseGRMConstruct a sparse GRM for a given data set
fitNULLGLMMFit the null logistic/linear mixed model and estimate the...
fit_SKAT_NULLFit the null logistic mixed model and estimate the variance...
SKATtest_usingSKATLibRun single variant score tests with SPA based on the logistic...
SPAGMMATtestRun single variant or gene- or region-based score tests with...
arodri7/SAIGE-GPU documentation built on Nov. 14, 2020, 5:44 a.m.

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