Files in asgersvenning/bachelor
Bachelor Data And Functions
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/FIA.R
R/PLANTS_meta.R
R/PLANTS_traits.R
R/aggregationGrid.R
R/asger_bachelor-package.R
R/bboxToRegularGrid.R
R/createAggregationGrid.R
R/createDictonary.R
R/ecoregionsGridToRasterstack.R
R/ecoregionsToGrid.R
R/ecoregions_L0.R
R/ecoregions_L1.R
R/ecoregions_L2.R
R/ecoregions_L3.R
R/ecoregions_L4.R
R/ecoregions_meta.R
R/functional_dispersion.R
R/functional_divergence.R
R/functional_evenness.R
R/functional_identity.R
R/functional_richness.R
R/globals.R
R/gowerDissimilarity.R
R/gower_traits.R
R/quadratic_entropy.R
R/w.ECDF.R
README.Rmd
README.md
bachelor.Rproj
data-raw/DATASET.R
data-raw/EPA/META/fullTable.csv
data-raw/EPA/dissolved/ecoregions_L1.dbf
data-raw/EPA/dissolved/ecoregions_L1.prj
data-raw/EPA/dissolved/ecoregions_L1.shp
data-raw/EPA/dissolved/ecoregions_L1.shx
data-raw/EPA/dissolved/ecoregions_L2.dbf
data-raw/EPA/dissolved/ecoregions_L2.prj
data-raw/EPA/dissolved/ecoregions_L2.shp
data-raw/EPA/dissolved/ecoregions_L2.shx
data-raw/EPA/dissolved/ecoregions_L3.dbf
data-raw/EPA/dissolved/ecoregions_L3.prj
data-raw/EPA/dissolved/ecoregions_L3.shp
data-raw/EPA/dissolved/ecoregions_L3.shx
data-raw/EPA/dissolved/ecoregions_L4.dbf
data-raw/EPA/dissolved/ecoregions_L4.prj
data-raw/EPA/dissolved/ecoregions_L4.shp
data-raw/EPA/dissolved/ecoregions_L4.shx
data-raw/EPA/ecoregions_boundary.dbf
data-raw/EPA/ecoregions_boundary.prj
data-raw/EPA/ecoregions_boundary.shp
data-raw/EPA/ecoregions_boundary.shx
data-raw/FIA_PLANTS_EPA_load.R
data-raw/FIA_grid.csv
data-raw/PLANTS.csv
data-raw/aggregationGrid.tif
data/FIA.rda
data/PLANTS_meta.rda
data/PLANTS_traits.rda
data/aggregationGrid.rda
data/ecoregions_L0.rda
data/ecoregions_L1.rda
data/ecoregions_L2.rda
data/ecoregions_L3.rda
data/ecoregions_L4.rda
data/ecoregions_meta.rda
inst/REFERENCES.bib
man/FIA.Rd
man/PLANTS_meta.Rd
man/PLANTS_traits.Rd
man/aggregationGrid.Rd
man/asgerbachelor-package.Rd
man/bboxToRegularGrid.Rd
man/createAggregationGrid.Rd
man/createDictionary.Rd
man/ecoregionsGridToRasterstack.Rd
man/ecoregionsToGrid.Rd
man/ecoregions_L0.Rd
man/ecoregions_L1.Rd
man/ecoregions_L2.Rd
man/ecoregions_L3.Rd
man/ecoregions_L4.Rd
man/ecoregions_meta.Rd
man/figures/README-example-1.png
man/functional_dispersion.Rd
man/functional_divergence.Rd
man/functional_evenness.Rd
man/functional_identity.Rd
man/functional_richness.Rd
man/gowerDissimilarity.Rd
man/gower_traits.Rd
man/quadratic_entropy.Rd
man/w.ECDF.Rd
scripts for report/Ecosystem discrimination/0.932
scripts for report/Ecosystem discrimination/Ecosystem discrimination.Rproj
scripts for report/Ecosystem discrimination/LDA.R
scripts for report/Ecosystem discrimination/LDA_accuracy.txt
scripts for report/Ecosystem discrimination/SVM_accuracy.txt
scripts for report/Ecosystem discrimination/SVM_confusion_matrix.png
scripts for report/Ecosystem discrimination/accuracy.txt
scripts for report/Ecosystem discrimination/decisionBoundaryVisualization.R
scripts for report/Ecosystem discrimination/discriminationScript.R
scripts for report/FIA_species_codes.xlsx
scripts for report/Final Visualizations/Final Visualizations.Rproj
scripts for report/Final Visualizations/GAM_Krig.R
scripts for report/Final Visualizations/LATIN_dict.rds
scripts for report/Final Visualizations/PA_bias.R
scripts for report/Final Visualizations/PA_bias_misc.R
scripts for report/Final Visualizations/PA_bias_models.R
scripts for report/Final Visualizations/PA_richness_evenness_misc.R
scripts for report/Final Visualizations/PA_richness_evenness_models.R
scripts for report/Final Visualizations/Rplot001.png
scripts for report/Final Visualizations/TR.rds
scripts for report/Final Visualizations/TRW.rds
scripts for report/Final Visualizations/afterGenusMean.txt
scripts for report/Final Visualizations/allIndices.rds
scripts for report/Final Visualizations/allTab.rds
scripts for report/Final Visualizations/autocorrelation.R
scripts for report/Final Visualizations/collinearityVisualization.R
scripts for report/Final Visualizations/communityCoords.rds
scripts for report/Final Visualizations/convergencePlot.png
scripts for report/Final Visualizations/deltaRich.R
scripts for report/Final Visualizations/eastWestSampling.png
scripts for report/Final Visualizations/ecoregion_REResidualPlot.png
scripts for report/Final Visualizations/ecoregion_biasResidualPlot.png
scripts for report/Final Visualizations/exampleNoChangeFDis.png
scripts for report/Final Visualizations/exampleRandomWeights.png
scripts for report/Final Visualizations/fSP.rds
scripts for report/Final Visualizations/finalBiasResult.csv
scripts for report/Final Visualizations/finalBiasResult.png
scripts for report/Final Visualizations/finalModelAIC.png
scripts for report/Final Visualizations/finalREResult.csv
scripts for report/Final Visualizations/finalREResult.png
scripts for report/Final Visualizations/fitted_REResidualPlot.png
scripts for report/Final Visualizations/fitted_biasResidualPlot.png
scripts for report/Final Visualizations/fontAsPoly.R
scripts for report/Final Visualizations/frontpage.R
scripts for report/Final Visualizations/gamlss.R
scripts for report/Final Visualizations/identity_REResidualPlot.png
scripts for report/Final Visualizations/illustrations.R
scripts for report/Final Visualizations/indexDistribution.png
scripts for report/Final Visualizations/index_by_ecoregion.R
scripts for report/Final Visualizations/index_by_ecoregion.png
scripts for report/Final Visualizations/interpolatedMap.png
scripts for report/Final Visualizations/maps.R
scripts for report/Final Visualizations/mcMethodComparison.R
scripts for report/Final Visualizations/modelPrediction.R
scripts for report/Final Visualizations/modelSummary.rds
scripts for report/Final Visualizations/predictors_REResidualPlot.png
scripts for report/Final Visualizations/realMap.png
scripts for report/Final Visualizations/samples_REResidualPlot.png
scripts for report/Final Visualizations/samples_biasResidualPlot.png
scripts for report/Final Visualizations/simMultComp.R
scripts for report/Final Visualizations/simulated_bias.R
scripts for report/Final Visualizations/spatial_REResidualPlot.png
scripts for report/Final Visualizations/spatial_biasResidualPlot.png
scripts for report/Final Visualizations/tSP.rds
scripts for report/Final Visualizations/tidyData_and_calculate_indices.R
scripts for report/Final Visualizations/traitCoverage.txt
scripts for report/Final Visualizations/trait_types.csv
scripts for report/Final Visualizations/trait_types.xlsx
scripts for report/Final Visualizations/usedTraits.txt
scripts for report/Final Visualizations/writePackageReferences.R
scripts for report/Report/Aarhus_University_seal.png
scripts for report/Report/Asger Svenning - Bachelor Rapport - Biologi v. Aarhus Universitet.pdf
scripts for report/Report/FIA_species_codes.xlsx
scripts for report/Report/Notes - Week 16.docx
scripts for report/Report/Report.Rproj
scripts for report/Report/exampleNoChangeFDis.png
scripts for report/Report/exampleRandomWeights.png
scripts for report/Report/exampleRichnessEvenness.png
scripts for report/Report/functional_indices_normal.png
scripts for report/Report/functional_indices_normal_lm.csv
scripts for report/Report/functional_indices_uniform.png
scripts for report/Report/functional_indices_uniform_lm.csv
scripts for report/Report/main.Rmd
scripts for report/Report/main.pdf
scripts for report/Report/main.tex
scripts for report/Report/main.toc
scripts for report/Report/mgcv.bib
scripts for report/Report/misc
scripts for report/Report/nature.csl
scripts for report/Report/posteriorAssemblageClusters.R
scripts for report/Report/preamble.log
scripts for report/Report/preamble.tex
scripts for report/Report/references.bib
scripts for report/Report/simR_res_lm.csv
scripts for report/Report/simulate_functional_indicies_normal.R
scripts for report/Report/simulate_functional_indicies_uniform.R
scripts for report/Report/simulatedTable.png
scripts for report/Report/simulation_table_visualization.png
scripts for report/Report/tab.aux
scripts for report/Report/tab.tex
scripts for report/Report/testWrap.Rmd
scripts for report/Report/testWrap.html
scripts for report/Report/testWrap.log
scripts for report/Report/testWrap.pdf
scripts for report/Report/testWrap.tex
scripts for report/Report/testWrap.toc
scripts for report/Report/traitPlot.png
scripts for report/Report/traits.xlsx
scripts for report/Report/~$tes - Week 16.docx
scripts for report/nature.csl
scripts for report/reference_rmarkdown.Rmd
scripts for report/references.bib
scripts for report/references_from_mendeley.bib
tests/testthat.R
tests/testthat/test-PLANTS_meta.R
