Files in ashishjain1988/MAFDash
Create an HTML Dashboard to Visualize Data from MAF File
.DS_Store
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
LICENSE
MAFDash.Rproj
NAMESPACE
R/.DS_Store
R/filterMAF.R
R/generateBurdenPlot.R
R/generateCOSMICSignaturePlot.R
R/generateMutationTypePlot.R
R/generateOncoPlot.R
R/generateOverlapPlot.R
R/generateSingleRibbonPlot.R
R/generateTCGAComparePlot.R
R/generateTiTvPlot.R
R/getMAFDashboard.R
R/getMAFDataTCGA.R
R/helperFunctions.R
README.md
docs/404.html
docs/articles/Advanced_Example.html
docs/articles/Advanced_Example_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Advanced_Example_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Advanced_Example_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Advanced_Example_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Customizing.html
docs/articles/MAFDash.html
docs/articles/MAFDash_files/crosstalk-1.2.0/css/crosstalk.min.css
docs/articles/MAFDash_files/crosstalk-1.2.0/js/crosstalk.js
docs/articles/MAFDash_files/crosstalk-1.2.0/js/crosstalk.js.map
docs/articles/MAFDash_files/crosstalk-1.2.0/js/crosstalk.min.js
docs/articles/MAFDash_files/crosstalk-1.2.0/js/crosstalk.min.js.map
docs/articles/MAFDash_files/crosstalk-1.2.0/scss/crosstalk.scss
docs/articles/MAFDash_files/figure-html/unnamed-chunk-15-1.png
docs/articles/MAFDash_files/figure-html/unnamed-chunk-16-1.png
docs/articles/MAFDash_files/figure-html/unnamed-chunk-17-1.png
docs/articles/MAFDash_files/figure-html/unnamed-chunk-18-1.png
docs/articles/MAFDash_files/figure-html/unnamed-chunk-5-1.png
docs/articles/MAFDash_files/figure-html/unnamed-chunk-6-1.png
docs/articles/MAFDash_files/figure-html/unnamed-chunk-6-2.png
docs/articles/MAFDash_files/figure-html/unnamed-chunk-7-1.png
docs/articles/MAFDash_files/figure-html/unnamed-chunk-9-1.png
docs/articles/MAFDash_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/articles/MAFDash_files/plotly-binding-4.10.0/plotly.js
docs/articles/MAFDash_files/plotly-htmlwidgets-css-2.5.1/plotly-htmlwidgets.css
docs/articles/MAFDash_files/plotly-main-2.5.1/plotly-latest.min.js
docs/articles/MAFDash_files/typedarray-0.1/typedarray.min.js
docs/articles/Quick_Start.html
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/compute_exome_coverage.html
docs/reference/createOncoMatrix.html
docs/reference/detectMAFGenome.html
docs/reference/filterMAF.html
docs/reference/filterMAF2.html
docs/reference/generateBurdenPlot-1.png
docs/reference/generateBurdenPlot-2.png
docs/reference/generateBurdenPlot.html
docs/reference/generateCOSMICMutSigSimHeatmap-1.png
docs/reference/generateCOSMICMutSigSimHeatmap.html
docs/reference/generateMutationTypePlot-1.png
docs/reference/generateMutationTypePlot.html
docs/reference/generateOncoPlot-1.png
docs/reference/generateOncoPlot.html
docs/reference/generateOverlapPlot-1.png
docs/reference/generateOverlapPlot-2.png
docs/reference/generateOverlapPlot.html
docs/reference/generateRibbonPlot-1.png
docs/reference/generateRibbonPlot.html
docs/reference/generateTCGAComparePlot-1.png
docs/reference/generateTCGAComparePlot.html
docs/reference/generateTiTvPlot.html
docs/reference/generateVariantTable.html
docs/reference/getMAFDashboard.html
docs/reference/getMAFdataTCGA.html
docs/reference/getTCGAClinicalAnnotation.html
docs/reference/getTCGAClinicalColors.html
docs/reference/index.html
docs/sitemap.xml
inst/extdata/COSMIC_v3.2_SBS.txt
inst/extdata/MAFDash.Rmd
inst/extdata/burden.Rmd
inst/extdata/cooccurence.Rmd
inst/extdata/custom_image.Rmd
inst/extdata/etiology_clustering.raw_SBS_COSMICV3.2.txt
inst/extdata/heatmap.Rmd
inst/extdata/oncoplot.Rmd
inst/extdata/summary_plot.Rmd
inst/extdata/summary_table.Rmd
inst/extdata/test.bed
inst/extdata/test.clinical.txt
inst/extdata/test.mutect2.maf.gz
inst/extdata/variant_table.Rmd
man/.DS_Store
man/compute_exome_coverage.Rd
man/createOncoMatrix.Rd
man/detectMAFGenome.Rd
man/filterMAF.Rd
man/filterMAF2.Rd
man/generateBurdenPlot.Rd
man/generateCOSMICMutSigSimHeatmap.Rd
man/generateMutationTypePlot.Rd
man/generateOncoPlot.Rd
man/generateOverlapPlot.Rd
man/generateRibbonPlot.Rd
man/generateTCGAComparePlot.Rd
man/generateTiTvPlot.Rd
man/generateVariantTable.Rd
man/getMAFDashboard.Rd
man/getMAFdataTCGA.Rd
man/getTCGAClinicalAnnotation.Rd
man/getTCGAClinicalColors.Rd
vignettes/.DS_Store
vignettes/Advanced_Example.Rmd
vignettes/Customizing.Rmd
vignettes/MAFDash.Rmd
vignettes/Quick_Start.Rmd
