Files in atorus-research/Tplyr
A Traceability Focused Grammar of Clinical Data Summary

.Rbuildignore
.github/.gitignore
.github/CONTRIBUTING.md .github/ISSUE_TEMPLATE.md .github/PULL_REQUEST_TEMPLATE.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
CRAN-SUBMISSION
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/apply_conditional_format.R R/apply_formats.R R/assertions.R R/build.R R/call_standardise.R R/collapse_row_labels.R R/column_headers.R R/count.R R/count_bindings.R R/data.R R/denom.R R/desc.R R/desc_bindings.R R/format.R R/gather_defaults.R R/get_numeric.R R/layer.R R/layer_bindings.R R/layer_templates.R R/layering.R R/meta-builders.R R/meta-helpers.R R/meta.R R/meta_utils.R R/nested.R R/num_fmt.R R/pop_data.R R/prebuild.R R/precision.R R/print.R R/process_metadata.R R/regex.R R/replace_leading_whitespace.R R/riskdiff.R R/set_format_strings.R R/set_limit_data_by.R R/shift.R R/shift_bindings.R R/sort.R R/stats.R R/str_extractors.R R/str_indent_wrap.R R/table.R R/table_bindings.R R/utils-pipe.R R/utils.R R/zzz.R README.Rmd README.md
Tplyr.Rproj
_pkgdown.yml
cran-comments.md data-raw/DATASET.R data-raw/adae.R
data-raw/adae.Rdata
data-raw/adas.R
data-raw/adas.Rdata
data-raw/adlb.R
data-raw/adlb.Rdata
data-raw/adpe.R data-raw/adsl.R
data-raw/adsl.Rdata
data/tplyr_adae.rda
data/tplyr_adas.rda
data/tplyr_adlb.rda
data/tplyr_adpe.rda
data/tplyr_adsl.rda
docs/404.html
docs/CONTRIBUTING.html
docs/ISSUE_TEMPLATE.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/PULL_REQUEST_TEMPLATE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/Advanced_Tables_with_tplyr.html
docs/articles/Tplyr_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Tplyr_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Tplyr_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Tplyr_files/header-attrs-2.11/header-attrs.js
docs/articles/alpha-release.html
docs/articles/beta-release.html
docs/articles/count.html
docs/articles/count_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/count_files/anchor-sections-1.0/anchor-sections.css
docs/articles/count_files/anchor-sections-1.0/anchor-sections.js
docs/articles/count_files/header-attrs-2.11/header-attrs.js
docs/articles/count_shift.html
docs/articles/count_shift_files/kePrint-0.0.1/kePrint.js
docs/articles/custom-metadata.html
docs/articles/demo_table.png
docs/articles/denom.html
docs/articles/denom_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/denom_files/anchor-sections-1.0/anchor-sections.css
docs/articles/denom_files/anchor-sections-1.0/anchor-sections.js
docs/articles/denom_files/header-attrs-2.11/header-attrs.js
docs/articles/desc-vignette.html
docs/articles/desc.html
docs/articles/desc_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/desc_files/anchor-sections-1.0/anchor-sections.css
docs/articles/desc_files/anchor-sections-1.0/anchor-sections.js
docs/articles/desc_files/header-attrs-2.11/header-attrs.js
docs/articles/getting-started.html
docs/articles/index.html
docs/articles/metadata.html
docs/articles/options-vignette.html
docs/articles/options.html
docs/articles/options_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/options_files/anchor-sections-1.0/anchor-sections.css
docs/articles/options_files/anchor-sections-1.0/anchor-sections.js
docs/articles/options_files/header-attrs-2.11/header-attrs.js
docs/articles/readme.html
docs/articles/readme_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/readme_files/anchor-sections-1.0/anchor-sections.css
docs/articles/readme_files/anchor-sections-1.0/anchor-sections.js
docs/articles/readme_files/header-attrs-2.11/header-attrs.js
docs/articles/riskdiff.html
docs/articles/riskdiff_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/riskdiff_files/anchor-sections-1.0/anchor-sections.css
docs/articles/riskdiff_files/anchor-sections-1.0/anchor-sections.js
docs/articles/riskdiff_files/header-attrs-2.11/header-attrs.js
docs/articles/shift.html
docs/articles/shift_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/shift_files/anchor-sections-1.0/anchor-sections.css
docs/articles/shift_files/anchor-sections-1.0/anchor-sections.js
docs/articles/shift_files/header-attrs-2.11/header-attrs.js
docs/articles/sort.html
docs/articles/sort_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/sort_files/anchor-sections-1.0/anchor-sections.css
docs/articles/sort_files/anchor-sections-1.0/anchor-sections.js
docs/articles/sort_files/header-attrs-2.11/header-attrs.js
docs/articles/styled-table.html
docs/articles/styled-table_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/styled-table_files/anchor-sections-1.0/anchor-sections.css
docs/articles/styled-table_files/anchor-sections-1.0/anchor-sections.js
docs/articles/styled-table_files/header-attrs-2.11/header-attrs.js
docs/articles/styled_example.png
docs/articles/table.html
docs/articles/table_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/table_files/anchor-sections-1.0/anchor-sections.css
docs/articles/table_files/anchor-sections-1.0/anchor-sections.js
docs/articles/table_files/header-attrs-2.11/header-attrs.js
docs/articles/test.html
docs/articles/tplyr_internals.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/add_column_headers.html
docs/reference/add_risk_diff.html
docs/reference/add_total_row.html
docs/reference/append_metadata.html
docs/reference/apply_formats.html
docs/reference/apply_row_masks.html
docs/reference/build.html
docs/reference/by.html
docs/reference/f_str.html
docs/reference/figures/Atorus_Stickers_vF_Tplyr.png
docs/reference/figures/lifecycle-archived.svg
docs/reference/figures/lifecycle-defunct.svg
docs/reference/figures/lifecycle-deprecated.svg
docs/reference/figures/lifecycle-experimental.svg
docs/reference/figures/lifecycle-maturing.svg
docs/reference/figures/lifecycle-questioning.svg
docs/reference/figures/lifecycle-soft-deprecated.svg
docs/reference/figures/lifecycle-stable.svg
docs/reference/figures/lifecycle-superseded.svg
docs/reference/figures/logo.png
docs/reference/get_meta_result.html
docs/reference/get_meta_subset.html
docs/reference/get_metadata.html
docs/reference/get_numeric_data.html
docs/reference/get_stats_data.html
docs/reference/header_n.html
docs/reference/index.html
docs/reference/keep_levels.html
docs/reference/layer_attachment.html
docs/reference/layer_constructors.html
docs/reference/ordering.html
docs/reference/pipe.html
docs/reference/pop_data.html
docs/reference/pop_treat_var.html
docs/reference/precision_by.html
docs/reference/precision_on.html
docs/reference/process_formatting.html
docs/reference/process_statistic_data.html
docs/reference/process_statistic_formatting.html
docs/reference/process_summaries.html
docs/reference/set_custom_summaries.html
docs/reference/set_denom_ignore.html
docs/reference/set_denom_where.html
docs/reference/set_denoms_by.html
docs/reference/set_distinct_by.html
docs/reference/set_format_strings.html
docs/reference/set_indentation.html
docs/reference/set_missing_count.html
docs/reference/set_nest_count.html
docs/reference/set_numeric_where.html
docs/reference/set_outer_sort_position.html
docs/reference/set_precision_data.html
docs/reference/set_stats_as_columns.html
docs/reference/set_total_row_label.html
docs/reference/str_indent_wrap.html
docs/reference/table_format_defaults.html
docs/reference/target_var.html
docs/reference/tplyr.html
docs/reference/tplyr_layer.html
docs/reference/tplyr_meta.html
docs/reference/tplyr_table.html
docs/reference/treat_grps.html
docs/reference/treat_var.html
docs/reference/where.html
docs/sitemap.xml
man/Tplyr.Rd man/add_anti_join.Rd man/add_column_headers.Rd man/add_missing_subjects_row.Rd man/add_risk_diff.Rd man/add_total_row.Rd man/append_metadata.Rd man/apply_conditional_format.Rd man/apply_formats.Rd man/apply_row_masks.Rd man/build.Rd man/by.Rd man/collapse_row_labels.Rd man/f_str.Rd
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-maturing.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-soft-deprecated.svg
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/figures/logo.png
man/get_data_labels.Rd man/get_meta_result.Rd man/get_meta_subset.Rd man/get_metadata.Rd man/get_numeric_data.Rd man/get_stats_data.Rd man/get_tplyr_regex.Rd man/header_n.Rd man/keep_levels.Rd man/layer_attachment.Rd man/layer_constructors.Rd man/layer_templates.Rd man/metadata_additions.Rd man/ordering.Rd man/pipe.Rd man/pop_data.Rd man/pop_treat_var.Rd man/precision_by.Rd man/precision_on.Rd man/process_formatting.Rd man/process_metadata.Rd man/process_statistic_data.Rd man/process_statistic_formatting.Rd man/process_summaries.Rd man/replace_leading_whitespace.Rd man/set_custom_summaries.Rd man/set_denom_ignore.Rd man/set_denom_where.Rd man/set_denoms_by.Rd man/set_distinct_by.Rd man/set_format_strings.Rd man/set_indentation.Rd man/set_limit_data_by.Rd man/set_missing_count.Rd man/set_missing_subjects_row_label.Rd man/set_nest_count.Rd man/set_numeric_threshold.Rd man/set_outer_sort_position.Rd man/set_precision_data.Rd man/set_stats_as_columns.Rd man/set_total_row_label.Rd man/str_extractors.Rd man/str_indent_wrap.Rd man/table_format_defaults.Rd man/target_var.Rd man/tplyr_adae.Rd man/tplyr_adas.Rd man/tplyr_adlb.Rd man/tplyr_adpe.Rd man/tplyr_adsl.Rd man/tplyr_layer.Rd man/tplyr_meta.Rd man/tplyr_table.Rd man/treat_grps.Rd man/treat_var.Rd man/where.Rd
pkgdown/extra.css
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R tests/testthat/_snaps/apply_formats.md tests/testthat/_snaps/column_headers.md tests/testthat/_snaps/count.md tests/testthat/_snaps/data.md tests/testthat/_snaps/desc.md tests/testthat/_snaps/format.md tests/testthat/_snaps/functional.md tests/testthat/_snaps/get_numeric.md tests/testthat/_snaps/layer.md tests/testthat/_snaps/layer_templates.md tests/testthat/_snaps/layering.md tests/testthat/_snaps/meta.md tests/testthat/_snaps/meta_utils.md tests/testthat/_snaps/pop_data.md tests/testthat/_snaps/precision.md tests/testthat/_snaps/print.md tests/testthat/_snaps/properties_layer.md tests/testthat/_snaps/riskdiff.md tests/testthat/_snaps/shift.md tests/testthat/_snaps/table.md tests/testthat/_snaps/table_bindings.md tests/testthat/_snaps/utils.md
tests/testthat/adae.Rdata
tests/testthat/adlb.Rdata
tests/testthat/adsl.Rdata
tests/testthat/adsl.xpt
tests/testthat/count_t1
tests/testthat/count_t10
tests/testthat/count_t11
tests/testthat/count_t13
tests/testthat/count_t2
tests/testthat/count_t3
tests/testthat/count_t4
tests/testthat/count_t5
tests/testthat/count_t6
tests/testthat/count_t7
tests/testthat/count_t8
tests/testthat/count_t9
tests/testthat/fstr_print.txt
tests/testthat/fstr_str.txt
tests/testthat/layer_print.txt
tests/testthat/layer_str.txt
tests/testthat/print_str.txt
tests/testthat/t_cap.csv
tests/testthat/t_cap_comp.Rdata
tests/testthat/t_uncap.csv
tests/testthat/t_uncap_comp.Rdata
tests/testthat/table_built_print.txt
tests/testthat/table_built_str.txt
tests/testthat/table_print.txt
tests/testthat/table_str.txt
tests/testthat/test-apply_conditional_format.R tests/testthat/test-apply_formats.R tests/testthat/test-assertions.R tests/testthat/test-build.R tests/testthat/test-collapse_row_labels.R tests/testthat/test-column_headers.R tests/testthat/test-count.R tests/testthat/test-data.R tests/testthat/test-denom.R tests/testthat/test-desc.R tests/testthat/test-format.R tests/testthat/test-functional.R tests/testthat/test-get_numeric.R tests/testthat/test-layer.R tests/testthat/test-layer_templates.R tests/testthat/test-layering.R tests/testthat/test-meta.R tests/testthat/test-meta_utils.R tests/testthat/test-num_fmt.R tests/testthat/test-opts.R tests/testthat/test-pop_data.R tests/testthat/test-precision.R tests/testthat/test-print.R tests/testthat/test-properties_layer.R tests/testthat/test-regex.R tests/testthat/test-replace_leading_whitespace.R tests/testthat/test-riskdiff.R tests/testthat/test-set_limit_data_by.R tests/testthat/test-shift.R tests/testthat/test-sort.R tests/testthat/test-str_extractors.R tests/testthat/test-str_indent_wrap.R tests/testthat/test-table.R tests/testthat/test-table_bindings.R tests/testthat/test-utils.R
uat/input/adae.xpt
uat/input/adlbc.xpt
uat/input/adsl.xpt
uat/input/advs.xpt
uat/input/specs.csv
uat/input/test_cases.csv
uat/output/test_1.RData
uat/output/test_10.RData
uat/output/test_11.RData
uat/output/test_12.RData
uat/output/test_13.RData
uat/output/test_14.RData
uat/output/test_15.RData
uat/output/test_16.RData
uat/output/test_17.RData
uat/output/test_18.RData
uat/output/test_19.RData
uat/output/test_2.RData
uat/output/test_20.RData
uat/output/test_21.RData
uat/output/test_22.RData
uat/output/test_23.RData
uat/output/test_24.RData
uat/output/test_25.RData
uat/output/test_26.RData
uat/output/test_27.RData
uat/output/test_28.RData
uat/output/test_29.RData
uat/output/test_3.RData
uat/output/test_30.RData
uat/output/test_31.RData
uat/output/test_32.RData
uat/output/test_33.RData
uat/output/test_34.RData
uat/output/test_35.RData
uat/output/test_36.RData
uat/output/test_37.RData
uat/output/test_38.RData
uat/output/test_39.RData
uat/output/test_4.RData
uat/output/test_40.RData
uat/output/test_41.RData
uat/output/test_42.RData
uat/output/test_43.RData
uat/output/test_44.RData
uat/output/test_45.RData
uat/output/test_46.RData
uat/output/test_47.RData
uat/output/test_48.RData
uat/output/test_49.RData
uat/output/test_5.RData
uat/output/test_50.RData
uat/output/test_51.RData
uat/output/test_52.RData
uat/output/test_53.RData
uat/output/test_54.RData
uat/output/test_55.RData
uat/output/test_56.RData
uat/output/test_57.RData
uat/output/test_58.RData
uat/output/test_59.RData
uat/output/test_6.RData
uat/output/test_60.RData
uat/output/test_61.rtf
uat/output/test_62.RData
uat/output/test_63.RData
uat/output/test_64.RData
uat/output/test_65.RData
uat/output/test_7.RData
uat/output/test_8.RData
uat/output/test_9.RData
uat/references/input/app.R uat/references/input/helper_test_code.R uat/references/input/roxy_block_details.R
uat/references/output/atorus_logo.png
uat/references/output/header.tex
uat/references/output/specification.Rmd uat/references/output/test_cases.Rmd uat/references/output/uat.Rmd
uat/references/output/uat.log
uat/references/output/uat.pdf
uat/references/output/vur_auto.Rds
uat/test_cases.R uat/testing/uat_script_calls.R
vignettes/.gitignore
vignettes/Tplyr.Rmd vignettes/count.Rmd vignettes/custom-metadata.Rmd
vignettes/demo_table.png
vignettes/denom.Rmd vignettes/desc.Rmd vignettes/desc_layer_formatting.Rmd vignettes/general_string_formatting.Rmd vignettes/layer_templates.Rmd vignettes/metadata.Rmd vignettes/options.Rmd vignettes/post_processing.Rmd vignettes/riskdiff.Rmd vignettes/shift.Rmd vignettes/sort.Rmd vignettes/styled-table.Rmd
vignettes/styled_example.png
vignettes/styled_example.rtf
vignettes/table.Rmd
vignettes/tplyr_options.csv
atorus-research/Tplyr documentation built on Feb. 21, 2024, 7:36 p.m.