API for ayeaton/scRNAscripts
| Global functions | |
|---|---|
| add_dim_red_seurat | Source code |
| assemble_seurat_obj_hto | Source code |
| bin_genes | Source code |
| boot_pval | Source code |
| boot_seurat | Source code |
| boot_zval | Source code |
| calc_boot_score | Source code |
| calc_clust_averages | Source code |
| calculate_cluster_stats | Source code |
| calculate_clusters | Source code Source code |
| calculate_variance | Source code |
| cluster_stats_bar | Source code |
| create_color_vect | Source code |
| create_seurat_obj | Source code |
| create_seurat_obj_adt | Source code |
| create_seurat_obj_hto | Source code |
| diff_exp | Source code |
| filter_data | Source code |
| filter_mat_by_cpm | Source code |
| find_clusters | Source code |
| get_binned_module | Source code |
| get_boot_scores | Source code |
| get_dr_point_size | Source code |
| get_smooth_module | Source code |
| hello | Man page Source code |
| load_sample_counts_matrix | Source code |
| log_normalize_data | Source code |
| loop_plot_scatter | Source code |
| manual_hto | Source code |
| max_scores | Source code |
| module_score | Source code |
| normalize_mat_by_gene | Source code |
| plot_genes_module | Source code |
| plot_qc_seurat | Source code |
| plot_scatter | Source code |
| plot_scores_heatmap | Source code |
| read_remove.unmapped | Source code |
| rescale_vector | Source code |
| run_dimensionality_reduction | Source code |
| run_iscore | Source code |
| run_pca | Source code |
| run_rsscore | Source code |
| run_sscore | Source code |
| run_tsne | Source code |
| run_umap | Source code |
| run_zscore | Source code |
| save_counts_matrix | Source code |
| save_seurat_metadata | Source code |
| scale_rows | Source code |
| scale_rows_01 | Source code |
| scale_rows_rank | Source code |
| sctransform_data | Source code |
| seurat_plot_hto | Source code |
| simple_score | Source code |
| softmax | Source code |
| subset_singlets | Source code |
| write_message | Source code |
