Man pages for ayurovsky/rnaGinesis
Simulate gene expression data
| add_error | Description |
| calculate_initial_mu_and_A | Calculate Initial Mu and A Helper function that, given an... |
| Complete_simulation | Description |
| evalCOSDIST | Compare two sets of column data (automatic matching) |
| evalH.RMSE | Compare two sets of column data (automatic matching) |
| evalRMSE | Compare two sets of column data (automatic matching) |
| makeCentroid | Creates centroids representing average gene expression... |
| make_W | Creates list of individual Ws for each sample and expression... |
| NMF_analyze | Description |
| parseGSE19830_LiverLungBrainRaw | get the liver lung brain data with getGEO |
| rearrange | Rearranges resultW, result H to match trueW, trueH ordering |
| rearrangeResult | Helper method to rearrange results to match truths |
| runNMF | Runs NMF on mixture data and obtains result W, result H |
| sim_data | Take in a single mu and A, and a mixture matrix H Return... |
| sim_data_1 | Helper function that: use a single mixture and a set of mvn... |
| sim_H | Take in direchelet parameters Return a mixture matrix |
| simulate_and_test | Description |
| sortMu | Take in a single Mu and A Return a single adjusted Mu and A |
| subsetCentroid | Obtains cell-type specific gene expression profiles of X most... |
| sum_to_1 | Description |
| tot.cor | Description |
| tot.rmse | Description |
