| AnyObsByLine | function that return 1 for a vector without observation... |
| CInLPN | Causal Inference in a Latent Processes Network |
| CInLPN.default | Function that start estimation and prediction tasks |
| CInLPN.estim | Title |
| CInLPN-package | A package for Causal Inference in a Latent Processes Network |
| compoYiNA | After vectorising the vzector Yi, this function returns a... |
| ConstrA | Function that constructs the transition matrix at time t |
| data | simulated data |
| DataFormat | Function to formated the data |
| DparChol | Function that computes a symetric D matric from it Cholesky L |
| fit | Function that computes the fits (marginal and... |
| fit.CInLPN | Marginal and subject-specific predictions on the training... |
| f.link | Generate model.matrix for transformation of outcomes |
| f_mvrnorm | Generate a multivate normal vector |
| f_paras.ini | Initialisation of parameters |
| f_TempsDiscr | function that discretized a vector of time with a given... |
| f_trSpline | Function that compute transformaitions by I-splines basis and... |
| f_var_cov | function to create the variance-covariance matrix from vector... |
| f_Yi_r_NA_by0 | Function that replaces NAs by 0.0 just for computatinal need |
| GmatA0totaui | Function that creates a matrix K,K*(max(tau_i)-1) containing... |
| GmatprodAstotau | Function that creates a big matrix containing... |
| inclu_intercerpt | Function used to replace 1 by intercept in a formula |
| is_na_vec | function that return 1 if all element of a vector is NA |
| KmatDiag | Function that creates a K-block diagonal matrix with non... |
| Loglik | Function that computes the log-likelihood of the observed... |
| matNui | Function that constructs the matrix nu_t_j, the expectation... |
| mat_trans | Function to create a matrix of all transition matrix and... |
| OneOutcomeAtLeast | function that filters initial data to return only individuals... |
| Parametre | Function to initialize parameters kin multivariate CInLPN... |
| Plot_a | Plot the temporal infmuences matrix A |
| PlotX | Function to plot trajectories of observation and their... |
| pred | Function that computes the predictions (marginal and... |
| predict.CInLPN | Marginal predictions for CInLPN objects |
| print.CInLPN | Print CInLPN object |
| ProdA | Function that computes the product of A(t) for t1 to t2 |
| summary.CInLPN | Summary of CInLPN object |
| taille | Function that compute the length of vector without NAs |
| TimeDiscretization | function that discretized a vector of time with a given... |
| tsGmatprodA0totau | Function that creates a big matrix ts_G_mat_prod_A_0_to_tau... |
| vecaijt | Function that computes all coefficients of the transition... |
| VecToMat | Function that transforms a vector to a matrix |
| vectorise | Function that vectorises a matrix by rows |
| WaldMult | Multiple Wald test |
| YiNui | Function that computes the difference (mat_Yi - mat_Nu_i),... |
| YiwoNA | Function that returns Yi (a vector) without NAs values |
