Files in baeyc/dormancy
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/chillingUnits.R
R/em.R
R/extractTemp.R
R/forcingUnits.R
R/generateMCMCsample.R
R/mcmc.R
R/modelProbaBudburst.R
R/prior.R
README.Rmd
README.html
README.md
_pkgdown.yml
analyses/analyzeFittedParams.R
analyses/analyzeResults.R
analyses/calibration.R
analyses/extractDataPerSpecies.R
analyses/graphsResults.R
data/données dormance arbres/Meteo_global_4.0 - extrait.txt
data/données dormance arbres/données phéno Quercus robur.csv
data/données dormance arbres/données phéno Quercus robur.xlsx
data/meteo.Lesquin.txt
data/meteo.serre
data/mydata.bb.txt
data/obs.data.acepse.rds
data/obs.data.aeship.rds
data/obs.data.alnglu.rds
data/obs.data.betpen.rds
data/obs.data.carbet.rds
data/obs.data.cassat.rds
data/obs.data.corave.rds
data/obs.data.fagsyl.rds
data/obs.data.fraexc.rds
data/obs.data.lardec.rds
data/obs.data.pruavi.rds
data/obs.data.querob.rds
data/results/AdaptiveGlobal/Priors unif et norm/ar_acepse.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_aeship.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_betpen.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_carbet.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_cassat.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_corave.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_lardec.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif et norm/ar_querob.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_acepse.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_aeship.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_betpen.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_carbet.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_cassat.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_corave.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_lardec.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu.cum_querob.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu_curves.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cu_curves_map.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_acepse.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_aeship.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_betpen.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_carbet.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_cassat.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_corave.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_lardec.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif et norm/cufu.cum_querob.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_acepse.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_aeship.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_betpen.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_carbet.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_cassat.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_corave.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_lardec.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu.cum_querob.pdf
data/results/AdaptiveGlobal/Priors unif et norm/fu_curves.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_acepse.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_aeship.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_betpen.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_carbet.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_cassat.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_corave.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_lardec.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif et norm/mcmc_chain_querob.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_acepse.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_aeship.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_betpen.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_carbet.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_cassat.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_corave.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_lardec.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif et norm/posterior_vs_prior_querob.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_acepse.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_aeship.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_betpen.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_carbet.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_cassat.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_corave.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_lardec.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif et norm/predictions_querob.pdf
data/results/AdaptiveGlobal/Priors unif et norm/priors.txt
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_acepse.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_aeship.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_betpen.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_carbet.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_cassat.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_corave.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_lardec.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif et norm/probaBB_querob.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_acepse.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_aeship.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_betpen.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_carbet.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_cassat.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_corave.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_lardec.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif et norm/roc_querob.pdf
data/results/AdaptiveGlobal/Priors unif/ar_acepse.pdf
data/results/AdaptiveGlobal/Priors unif/ar_aeship.pdf
data/results/AdaptiveGlobal/Priors unif/ar_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif/ar_betpen.pdf
data/results/AdaptiveGlobal/Priors unif/ar_carbet.pdf
data/results/AdaptiveGlobal/Priors unif/ar_cassat.pdf
data/results/AdaptiveGlobal/Priors unif/ar_corave.pdf
data/results/AdaptiveGlobal/Priors unif/ar_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif/ar_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif/ar_lardec.pdf
data/results/AdaptiveGlobal/Priors unif/ar_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif/ar_querob.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_acepse.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_aeship.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_betpen.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_carbet.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_cassat.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_corave.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_lardec.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif/cu.cum_querob.pdf
data/results/AdaptiveGlobal/Priors unif/cu_curves.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_acepse.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_aeship.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_betpen.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_carbet.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_cassat.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_corave.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_lardec.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif/cufu.cum_querob.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_acepse.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_aeship.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_betpen.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_carbet.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_cassat.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_corave.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_lardec.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif/fu.cum_querob.pdf
data/results/AdaptiveGlobal/Priors unif/fu_curves.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_acepse.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_aeship.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_betpen.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_carbet.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_cassat.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_corave.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_lardec.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif/mcmc_chain_querob.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_acepse.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_aeship.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_betpen.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_carbet.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_cassat.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_corave.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_lardec.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif/posterior_vs_prior_querob.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_acepse.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_aeship.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_betpen.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_carbet.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_cassat.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_corave.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_lardec.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif/predictions_querob.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_acepse.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_aeship.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_betpen.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_carbet.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_cassat.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_corave.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_lardec.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif/probaBB_querob.pdf
data/results/AdaptiveGlobal/Priors unif/roc_acepse.pdf
data/results/AdaptiveGlobal/Priors unif/roc_aeship.pdf
data/results/AdaptiveGlobal/Priors unif/roc_alnglu.pdf
data/results/AdaptiveGlobal/Priors unif/roc_betpen.pdf
data/results/AdaptiveGlobal/Priors unif/roc_carbet.pdf
data/results/AdaptiveGlobal/Priors unif/roc_cassat.pdf
data/results/AdaptiveGlobal/Priors unif/roc_corave.pdf
data/results/AdaptiveGlobal/Priors unif/roc_fagsyl.pdf
data/results/AdaptiveGlobal/Priors unif/roc_fraexc.pdf
data/results/AdaptiveGlobal/Priors unif/roc_lardec.pdf
data/results/AdaptiveGlobal/Priors unif/roc_pruavi.pdf
data/results/AdaptiveGlobal/Priors unif/roc_querob.pdf
data/temperaturePlants.rds
docs/404.html
docs/articles/dormancy.html
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/chillingUnits.html
docs/reference/forcingUnits.html
docs/reference/hello.html
docs/reference/index.html
dormancy.Rproj
example.R
man/algoEM.Rd
man/chillingUnits.Rd
man/extractTemp.Rd
man/forcingUnits.Rd
man/generateMCMC.Rd
man/hello.Rd
man/mcmc.Rd
man/modelProbaBB.Rd
man/prior-class.Rd
vignettes/.gitignore
vignettes/dormancy.Rmd
