Man pages for bailey-lab/coiaf
Complexity of Infection Estimation with Allele Frequencies
| bootstrap_ci | Generate bootstrapped CI |
| coiaf-package | coiaf: Complexity of Infection Estimation with Allele... |
| compute_coi | Predict the COI |
| compute_coi_regression | Compute COI based on residuals of all loci against... |
| cont_sensitivity | Continuous sensitivity analysis |
| disc_sensitivity | Discrete Sensitivity analysis |
| distance_curves | Compute distance between two curves |
| error_plot | Error plot |
| example_real_data | Example real data |
| likelihood | Likelihood of a COI |
| optimize_coi | Optimize the COI |
| optimize_coi_regression | Compute COI based on all points fitted to best fitting curve... |
| pipe | Pipe operator |
| plot-simulation | Plot simulated data |
| process | Process data |
| process_real | Process real data |
| process_sim | Process simulated data |
| rbetabinom | Beta-binomial distribution |
| rdirichlet | Dirichlet distribution |
| sensitivity_plot | Sensitivity plot |
| sensitivity_plot_element | Single sensitivity plot |
| sim_biallelic | Simulate biallelic data |
| single_sensitivity | Single sensitivity analysis |
| theme_coiaf | Custom ggplot2 theme |
| theoretical_coi | Theoretical COI |
| tidyeval | Tidy eval helpers |
| world_map | World map plot |
