API for bakerwm/goldclipReport
Reporter for GoldCLIP (Title Case)
| Global functions | |
|---|---|
| .isBed6 | Source code Source code |
| .valid_fastqc_modules | Source code |
| AnnoParser | Source code |
| AnnoParser2 | Source code |
| AnnoParser3 | Source code |
| Bed2GRange | Source code Source code |
| BedAnnoBarplot | Source code |
| BedIntersect | Source code Source code |
| BedIntersectIntervals | Source code Source code |
| BedLenBarplot | Source code |
| BedLenParser | Source code |
| BedNumBarplot | Source code |
| BedParser | Source code |
| ColorPicker | Source code |
| DESeq2_add_mean | Source code |
| DESeq2_csv2df | Source code |
| DESeq2_data_from_matrix | Source code |
| DESeq2_de_ma | Source code |
| DESeq2_de_scatter | Source code |
| DESeq2_for_featureCounts | Source code |
| DESeq2_publish_plot | Source code |
| DESeq2_xls2df | Source code |
| DataframeColVal | Source code Source code |
| DataframeTopN | Source code Source code |
| GRanges_seqname_picker | Source code |
| GRanges_to_data.frame | Source code |
| GenerateInterval | Source code Source code |
| GetMiRNAExp | Source code |
| GetSeedmatch | Source code |
| MiRNAIdFormater | Source code Source code |
| PeakSensitivity | Source code Source code |
| QCBaseContent | Source code |
| SeedmatchFilter | Source code Source code |
| bw_reader | Source code |
| chipseq_bw_parser | Source code |
| chipseq_bw_parser2 | Source code |
| chipseq_bw_parser3 | Source code |
| chipseq_bw_parser4 | Source code |
| coverage_plot_dual | Source code |
| coverage_plot_single | Source code |
| demxBacteria | Source code |
| demxParser | Source code |
| demxReport | Source code |
| deseq2_run | Source code |
| deseqAddMeanValue | Source code |
| deseqCsvParser | Source code |
| deseqDesign | Source code |
| deseqFromMatrix | Source code |
| deseqHub | Source code |
| deseqHub2 | Source code |
| deseqIdConvertor | Source code |
| deseqImportData | Source code |
| deseqNode | Source code |
| deseqNode2 | Source code |
| deseqReader | Source code |
| design_example | Source code |
| fasize_reader | Source code |
| fastqc_plot | Source code |
| featureCountsParser | Source code |
| featureCountsReader | Source code |
| fig2url | Source code |
| get_genelist | Source code |
| ggseqlogo2 | Source code |
| go_enrich | Source code |
| go_group | Source code |
| hello | Man page Source code |
| homerDirToHtml | Source code |
| homerListToTable | Source code |
| homerMotifDescPlot | Source code |
| homerMotifDescVals | Source code |
| homerid2table | Source code |
| json2dataframe | Source code |
| kalColdata | Source code |
| make_deseq2_scatter_plot | Source code |
| make_deseq2_scatter_plot2 | Source code |
| map_stat_plot | Source code |
| map_stat_read | Source code |
| merge_df | Source code |
| merge_list_of_dataframes | Source code |
| numberBarplot | Source code |
| parseHomer | Source code |
| plot_n_pages | Source code |
| plot_scatter | Source code |
| publish_plot_de_scatter | Source code |
| str_common | Source code Source code |
| te_rename | Source code |
| theme_picker | Source code |
