Files in balomenos/DEsubs
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
DESCRIPTION
NAMESPACE
R/DEmeasures.R
R/DEsubs.R
R/TSPM.R
R/networkConstruction.R
R/subpathwayAnalysis.R
R/utilities.R
R/visualizations.R
R/zzz.R
inst/CITATION
inst/NEWS
inst/doc/DEsubs-manual.pdf
inst/extdata/Data/Disease_GAD.RData
inst/extdata/Data/Disease_OMIM.RData
inst/extdata/Data/Drug_DrugBank.RData
inst/extdata/Data/GO_bp.RData
inst/extdata/Data/GO_cc.RData
inst/extdata/Data/GO_mf.RData
inst/extdata/Data/KEGG.RData
inst/extdata/Data/TF.RData
inst/extdata/Data/edgeLists.RData
inst/extdata/Data/libraryEntrezToExternalNomenclature.RData
inst/extdata/Data/libraryEntrezToHGNC.RData
inst/extdata/Data/miRNA.RData
inst/extdata/User/toyData.txt
inst/extdata/data.RData
inst/unitTests/test_DEsubs.R
inst/unitTests/test_geneVisualization.R
inst/unitTests/test_organismVisualization.R
inst/unitTests/test_subpathwayToGraph.R
inst/unitTests/test_subpathwayVisualization.R
man/DEsubs.Rd
man/geneVisualization.Rd
man/organismVisualization.Rd
man/subpathwayToGraph.Rd
man/subpathwayTypes.Rd
man/subpathwayVisualization.Rd
tests/runTests.R
vignettes/DEsubs.Rmd
vignettes/citations.bib
vignettes/figures/fig1.png
vignettes/figures/fig2.png
vignettes/figures/fig3.png
