Man pages for baumer-lab/fertile
Creating Optimal Conditions for Reproducibility
| add_shim | Add a function to the list of functions that get checked for... |
| char_or_sym | Utility function |
| check_from_zip | Test projects in ZIP files |
| check_is_dir | Check whether a provided path is a directory |
| check_is_file | Check whether a provided path is a file |
| check_path | Check paths for portability |
| check_path_safe | Runs check_path, but will only work interactively and cannot... |
| check_path_shim | Check paths for portability |
| danger | Override functions masked by fertile and run from the... |
| dot-onAttach | Load shims into environment when fertile is attached |
| dot-onDetach | Remove shims from environment when fertile is detached |
| find_all_shimmable_functions | Find the names of all shimmable functions within the list of... |
| find_pkg_shimmable_functions | Find the names of all functions that are potentially... |
| find_pkgs_rec | Find packages |
| flat_map_chr | Utility function |
| function_name | Sub-function to help disable_added_shims operate: #2 |
| get_shim_code | Generate the code associated with writing a shim |
| has_rendered | Utility function to check whether a project has been updated... |
| interactive_log_on | Utility function to help w/ controlling interactive logging... |
| is_assign | Sub-function to help disable_added_shims operate: #3 |
| is_data_file | Test whether a given path is to a data file |
| is_function | Sub-function to help disable_added_shims operate: #1 |
| is_image_file | Test whether a given path is to an image file |
| is_r_file | Test whether a given path is to an R file |
| is_text_file | Test whether a given path is to a text file |
| log_push | Logging and reporting of file paths |
| log_report | Logging and reporting of file paths |
| log_touch | Create a new log file and return the path to the log |
| make_check | Create a fertile check object |
| print_one_check | Print a check function output |
| proj_badges | Get reproducibility badges for a project |
| proj_check | Reproducbility checks |
| proj_dependency_report | Return a sessionInfo() style report of the packages/software... |
| proj_pkg_script | Generate an R script to install all of the packages required... |
| proj_render | Render files in a project directory to update the render log... |
| proj_root | Find the project root, but always return something |
| proj_test | Analyze project for reproducibility |
| req_code | Extract requirements from code |
| req_file | Extract requirements from a file |
| req_file_r | File requirements |
| req_file_rmd | Rmd requirements |
| req_file_rnw | Rnw requirements |
| req_text | Read text for requirements |
| rmd_chunks | Read chunks |
| sandbox | Utility function to create a copy of a project in a temp... |
| shims | Shims for common input/output functions, used to create log... |
| takes_path_arg | Return name of a given function's file path-related argument |
| to_execute | load a list of packages and export the session info of them |
