API for bbolker/nlme
Linear and Nonlinear Mixed Effects Models
| Global functions | |
|---|---|
| .onUnload | Source code |
| ACF | Man page |
| ACF.gls | Man page Source code |
| ACF.lme | Man page Source code |
| Alfalfa | Man page |
| Assay | Man page |
| BodyWeight | Man page |
| Cefamandole | Man page |
| Dialyzer | Man page |
| Dim | Man page |
| Dim.corSpatial | Man page Source code |
| Dim.corStruct | Man page Source code |
| Dim.default | Man page Source code |
| Dim.pdCompSymm | Man page Source code |
| Dim.pdDiag | Man page Source code |
| Dim.pdIdent | Man page Source code |
| Dim.pdMat | Man page Source code |
| Dim.pdNatural | Man page Source code |
| Dim.pdSymm | Man page Source code |
| Earthquake | Man page |
| Fatigue | Man page |
| Gasoline | Man page |
| Glucose | Man page |
| Glucose2 | Man page |
| Gun | Man page |
| IGF | Man page |
| Initialize | Man page |
| Initialize.corAR1 | Man page |
| Initialize.corARMA | Man page Source code |
| Initialize.corCAR1 | Man page |
| Initialize.corCompSymm | Man page |
| Initialize.corHF | Man page |
| Initialize.corIdent | Man page Source code |
| Initialize.corLin | Man page Source code |
| Initialize.corNatural | Man page Source code |
| Initialize.corSpatial | Man page Source code |
| Initialize.corSpher | Man page Source code |
| Initialize.corStruct | Man page |
| Initialize.corSymm | Man page Source code |
| Initialize.glsStruct | Man page |
| Initialize.gnlsStruct | Man page Source code |
| Initialize.lmeStruct | Man page |
| Initialize.reStruct | Man page Source code |
| Initialize.varComb | Man page |
| Initialize.varConstPower | Man page |
| Initialize.varConstProp | Man page |
| Initialize.varExp | Man page |
| Initialize.varFixed | Man page Source code |
| Initialize.varFunc | Man page Source code |
| Initialize.varIdent | Man page Source code |
| Initialize.varPower | Man page |
| LDEsysMat | Man page Source code |
| MEEM | Source code |
| MEdecomp | Source code |
| MEdims | Source code |
| MEestimate | Source code |
| Machines | Man page |
| MathAchSchool | Man page |
| MathAchieve | Man page |
| Meat | Man page |
| Milk | Man page |
| Muscle | Man page |
| Names | Man page |
| Names.formula | Man page Source code |
| Names.listForm | Man page Source code |
| Names.pdBlocked | Man page Source code |
| Names.pdMat | Man page Source code |
| Names.reStruct | Man page Source code |
| Names<- | Man page |
| Names<-.pdBlocked | Man page |
| Names<-.pdMat | Man page |
| Names<-.reStruct | Man page |
| Nitrendipene | Man page |
| Oats | Man page |
| Orthodont | Man page |
| Ovary | Man page |
| Oxboys | Man page |
| Oxide | Man page |
| PBG | Man page |
| Phenobarb | Man page |
| Pixel | Man page |
| Quinidine | Man page |
| Rail | Man page |
| RatPupWeight | Man page |
| Relaxin | Man page |
| Remifentanil | Man page |
| Soybean | Man page |
| Spruce | Man page |
| Tetracycline1 | Man page |
| Tetracycline2 | Man page |
| VarCorr | Man page Source code |
| VarCorr.lme | Man page Source code |
| VarCorr.pdBlocked | Man page Source code |
| VarCorr.pdMat | Man page Source code |
| Variogram | Man page |
| Variogram.corExp | Man page Source code |
| Variogram.corGaus | Man page Source code |
| Variogram.corLin | Man page Source code |
| Variogram.corRatio | Man page Source code |
| Variogram.corSpatial | Man page Source code |
| Variogram.corSpher | Man page Source code |
| Variogram.default | Man page |
| Variogram.gls | Man page |
| Variogram.lme | Man page |
| Wafer | Man page |
| Wheat | Man page |
| Wheat2 | Man page |
| [.groupedData | Man page |
| [.pdBlocked | Man page |
| [.pdMat | Man page |
| [.reStruct | Man page |
| [<-.pdMat | Man page |
| `%||%` | Source code |
| `Names<-.pdMat` | Source code |
| `coef<-.corAR1` | Source code |
| `coef<-.corARMA` | Source code |
| `coef<-.corCAR1` | Source code |
| `coef<-.corCompSymm` | Source code |
| `coef<-.corIdent` | Source code |
| `coef<-.corNatural` | Source code |
| `coef<-.corSpatial` | Source code |
| `coef<-.corStruct` | Source code |
| `coef<-.corSymm` | Source code |
| `matrix<-.pdMat` | Source code |
| allCoef | Man page |
| anova.gls | Man page Source code |
| anova.lme | Man page Source code |
| as.data.frame.groupedData | Man page Source code |
| as.matrix.corStruct | Man page Source code |
| as.matrix.pdMat | Man page Source code |
| as.matrix.reStruct | Man page Source code |
| asOneFormula | Man page |
| asTable | Man page |
| asTable.groupedData | Man page Source code |
| augPred | Man page |
| augPred.gls | Man page Source code |
| augPred.lmList | Man page Source code |
| augPred.lme | Man page |
| balancedGrouped | Man page Source code |
| bdf | Man page |
| coef.corAR1 | Man page Source code |
| coef.corARMA | Man page Source code |
| coef.corARMAd | Man page |
| coef.corCAR1 | Man page Source code |
| coef.corCompSymm | Man page Source code |
| coef.corHF | Man page |
| coef.corIdent | Man page Source code |
| coef.corLin | Man page Source code |
| coef.corNatural | Man page Source code |
| coef.corSpatial | Man page Source code |
| coef.corSpher | Man page Source code |
| coef.corStruct | Man page |
| coef.corSymm | Man page Source code |
| coef.gls | Source code |
| coef.gnls | Man page Source code |
| coef.lmList | Man page |
| coef.lme | Man page |
| coef.modelStruct | Man page Source code |
| coef.pdBlocked | Man page Source code |
| coef.pdCompSymm | Man page Source code |
| coef.pdDiag | Man page Source code |
| coef.pdIdent | Man page Source code |
| coef.pdMat | Man page Source code |
| coef.pdNatural | Man page Source code |
| coef.pdSymm | Man page Source code |
| coef.reStruct | Man page Source code |
| coef.summary.gls | Man page |
| coef.summary.lme | Man page |
| coef.summary.nlsList | Man page Source code |
| coef.varComb | Man page |
| coef.varConstPower | Man page |
| coef.varConstProp | Man page |
| coef.varExp | Man page |
| coef.varFixed | Man page Source code |
| coef.varFunc | Man page Source code |
| coef.varIdent | Man page Source code |
| coef.varPower | Man page |
| coef<- | Man page |
| coef<-.corAR1 | Man page |
| coef<-.corARMA | Man page |
| coef<-.corCAR1 | Man page |
| coef<-.corCompSymm | Man page |
| coef<-.corHF | Man page |
| coef<-.corIdent | Man page |
| coef<-.corLin | Man page |
| coef<-.corNatural | Man page |
| coef<-.corSpatial | Man page |
| coef<-.corSpher | Man page |
| coef<-.corStruct | Man page |
| coef<-.corSymm | Man page |
| coef<-.modelStruct | Man page |
| coef<-.pdBlocked | Man page |
| coef<-.pdMat | Man page |
| coef<-.reStruct | Man page |
| coef<-.varComb | Man page |
| coef<-.varConstPower | Man page |
| coef<-.varConstProp | Man page |
| coef<-.varExp | Man page |
| coef<-.varFixed | Man page |
| coef<-.varIdent | Man page |
| coef<-.varPower | Man page |
| coefficients<- | Man page |
| collapse | Man page |
| collapse.groupedData | Man page Source code |
| compareFits | Man page |
| comparePred | Man page |
| comparePred.gls | Man page Source code |
| comparePred.lmList | Man page |
| comparePred.lme | Man page |
| confint.lmList | Source code |
| confint.lme | Source code |
| confint.nlsList | Source code |
| corAR1 | Man page |
| corARMA | Man page |
| corCAR1 | Man page |
| corClasses | Man page |
| corCompSymm | Man page |
| corExp | Man page |
| corFactor | Man page |
| corFactor.corAR1 | Man page Source code |
| corFactor.corARMA | Man page Source code |
| corFactor.corCAR1 | Man page Source code |
| corFactor.corCompSymm | Man page Source code |
| corFactor.corNatural | Man page Source code |
| corFactor.corSpatial | Man page Source code |
| corFactor.corStruct | Man page Source code |
| corFactor.corSymm | Man page Source code |
| corGaus | Man page |
| corIdent | Man page |
| corLin | Man page |
| corMatrix | Man page |
| corMatrix.corAR1 | Man page Source code |
| corMatrix.corARMA | Man page Source code |
| corMatrix.corCAR1 | Man page Source code |
| corMatrix.corCompSymm | Man page Man page Source code |
| corMatrix.corIdent | Man page Source code |
| corMatrix.corNatural | Man page Source code |
| corMatrix.corSpatial | Man page Source code |
| corMatrix.corStruct | Man page Source code |
| corMatrix.corSymm | Man page Source code |
| corMatrix.pdBlocked | Man page Source code |
| corMatrix.pdCompSymm | Man page Source code |
| corMatrix.pdDiag | Man page Source code |
| corMatrix.pdIdent | Man page Source code |
| corMatrix.pdMat | Man page Source code |
| corMatrix.pdSymm | Man page |
| corMatrix.reStruct | Man page Source code |
| corNatural | Man page Source code |
| corRatio | Man page |
| corSpatial | Man page |
| corSpher | Man page |
| corStruct | Man page |
| corSymm | Man page |
| covariate<- | Man page |
| covariate<-.varFunc | Man page |
| createConLin | Source code |
| deviance.lme | Source code |
| ergoStool | Man page |
| extractAIC.lme | Source code |
| fdHess | Man page Source code |
| fitted.gls | Source code |
| fitted.glsStruct | Man page |
| fitted.gnlsStruct | Man page Source code |
| fitted.lmList | Man page Source code |
| fitted.lme | Man page |
| fitted.lmeStruct | Man page |
| fitted.nlmeStruct | Man page Source code |
| fixed.effects | Man page |
| fixed.effects.lmList | Man page |
| fixef | Man page |
| fixef.lmList | Man page Source code |
| formula.gls | Source code |
| formula.gnls | Source code |
| formula.groupedData | Source code |
| formula.lmList | Source code |
| formula.modelStruct | Source code |
| formula.nlme | Source code |
| formula.nlsList | Source code |
| formula.pdBlocked | Man page Source code |
| formula.pdMat | Man page Source code |
| formula.reStruct | Man page Source code |
| formula.varFunc | Source code |
| gapply | Man page |
| getCovariate | Man page |
| getCovariate.corSpatial | Man page Source code |
| getCovariate.corStruct | Man page Source code |
| getCovariate.data.frame | Man page Source code |
| getCovariate.varFunc | Man page Source code |
| getCovariateFormula | Man page Source code |
| getData | Man page |
| getData.gls | Man page |
| getData.gnls | Man page Source code |
| getData.lmList | Man page Source code |
| getData.lme | Man page |
| getData.nlme | Man page |
| getData.nls | Man page Source code |
| getFixDF | Source code |
| getGroups | Man page |
| getGroups.corStruct | Man page Source code |
| getGroups.data.frame | Man page |
| getGroups.gls | Man page Source code |
| getGroups.lmList | Man page Source code |
| getGroups.lme | Man page |
| getGroups.varFunc | Man page Source code |
| getGroupsFormula | Man page |
| getGroupsFormula.default | Man page |
| getGroupsFormula.gls | Man page Source code |
| getGroupsFormula.lmList | Man page Source code |
| getGroupsFormula.lme | Man page |
| getGroupsFormula.reStruct | Man page Source code |
| getParsGnls | Source code |
| getParsNlme | Source code |
| getResponse | Man page |
| getResponse.data.frame | Man page Source code |
| getResponse.gls | Source code |
| getResponse.lmList | Source code |
| getResponseFormula | Man page Source code |
| getVarCov | Man page Source code |
| getVarCov.gls | Man page Source code |
| getVarCov.lme | Man page Source code |
| gls | Man page |
| glsApVar | Man page Source code |
| glsApVar.fullGlsLogLik | Source code |
| glsControl | Man page |
| glsEstimate | Man page Source code |
| glsObject | Man page |
| glsStruct | Man page |
| gnls | Man page Source code |
| gnlsApVar | Source code |
| gnlsControl | Man page |
| gnlsObject | Man page |
| gnlsStruct | Man page |
| groupedData | Man page |
| gsummary | Man page |
| intervals | Man page |
| intervals.gls | Man page Source code |
| intervals.lmList | Man page Source code |
| intervals.lme | Man page |
| isBalanced | Man page |
| isBalanced.groupedData | Man page Source code |
| isInitialized | Man page |
| isInitialized.pdBlocked | Man page Source code |
| isInitialized.pdMat | Man page Source code |
| isInitialized.reStruct | Source code |
| lmList | Man page |
| lmList.formula | Man page Source code |
| lmList.groupedData | Man page Source code |
| lme | Man page |
| lme.formula | Man page Source code |
| lme.groupedData | Man page Source code |
| lme.lmList | Man page Source code |
| lmeApVar | Source code |
| lmeApVar.fullLmeLogLik | Source code |
| lmeControl | Man page |
| lmeObject | Man page |
| lmeStruct | Man page |
| logDet | Man page |
| logDet.corIdent | Man page Source code |
| logDet.corStruct | Man page Source code |
| logDet.pdBlocked | Man page Source code |
| logDet.pdCompSymm | Man page Source code |
| logDet.pdDiag | Man page Source code |
| logDet.pdIdent | Man page Source code |
| logDet.pdMat | Man page Source code |
| logDet.pdNatural | Man page Source code |
| logDet.pdSymm | Man page Source code |
| logDet.reStruct | Man page Source code |
| logLik.corStruct | Man page Source code |
| logLik.gls | Man page Source code |
| logLik.glsStruct | Man page |
| logLik.gnls | Man page |
| logLik.gnlsStruct | Man page Source code |
| logLik.lmList | Man page Source code |
| logLik.lme | Man page |
| logLik.lmeStruct | Man page |
| logLik.lmeStructInt | Man page |
| logLik.reStruct | Man page Source code |
| logLik.varComb | Man page |
| logLik.varFunc | Man page Source code |
| matrix<- | Man page |
| matrix<-.pdBlocked | Man page |
| matrix<-.pdMat | Man page |
| matrix<-.reStruct | Man page |
| model.matrix.reStruct | Man page Source code |
| needUpdate | Man page |
| needUpdate.corStruct | Man page Source code |
| needUpdate.default | Man page Source code |
| needUpdate.modelStruct | Man page Source code |
| needUpdate.reStruct | Man page Source code |
| needUpdate.varComb | Man page |
| needUpdate.varIdent | Man page Source code |
| nfGroupedData | Man page |
| nlme | Man page Source code |
| nlme.formula | Man page Source code |
| nlme.nlsList | Man page Source code |
| nlmeControl | Man page |
| nlmeObject | Man page |
| nlmeStruct | Man page |
| nlsList | Man page |
| nlsList.formula | Man page Source code |
| nlsList.selfStart | Man page |
| nmGroupedData | Man page |
| nobs.gls | Source code |
| nobs.gnls | Source code |
| nonlinModel | Source code |
| pairs.compareFits | Man page Source code |
| pairs.lmList | Man page Source code |
| pairs.lme | Man page |
| pdBlocked | Man page |
| pdClasses | Man page |
| pdCompSymm | Man page |
| pdConstruct | Man page |
| pdConstruct.pdBlocked | Man page Source code |
| pdConstruct.pdCompSymm | Man page Source code |
| pdConstruct.pdDiag | Man page Source code |
| pdConstruct.pdIdent | Man page Source code |
| pdConstruct.pdLogChol | Man page Source code |
| pdConstruct.pdMat | Man page Source code |
| pdConstruct.pdNatural | Man page Source code |
| pdConstruct.pdSymm | Man page Source code |
| pdDiag | Man page |
| pdFactor | Man page Source code |
| pdFactor.pdBlocked | Man page Source code |
| pdFactor.pdCompSymm | Man page Source code |
| pdFactor.pdDiag | Man page Source code |
| pdFactor.pdIdent | Man page Source code |
| pdFactor.pdLogChol | Man page Source code |
| pdFactor.pdMat | Man page Source code |
| pdFactor.pdNatural | Man page Source code |
| pdFactor.pdSymm | Man page Source code |
| pdFactor.reStruct | Man page Source code |
| pdIdent | Man page |
| pdLogChol | Man page |
| pdMat | Man page Source code |
| pdMatrix | Man page |
| pdMatrix.pdBlocked | Man page Source code |
| pdMatrix.pdCompSymm | Man page Source code |
| pdMatrix.pdDiag | Man page Source code |
| pdMatrix.pdIdent | Man page Source code |
| pdMatrix.pdMat | Man page Source code |
| pdMatrix.pdNatural | Man page Source code |
| pdMatrix.pdSymm | Man page Source code |
| pdMatrix.reStruct | Man page Source code |
| pdNatural | Man page |
| pdSymm | Man page |
| phenoModel | Man page Source code |
| plot.ACF | Man page |
| plot.Variogram | Man page |
| plot.augPred | Man page |
| plot.compareFits | Man page |
| plot.gls | Man page Source code |
| plot.intervals.lmList | Man page |
| plot.lmList | Man page |
| plot.lme | Man page |
| plot.nffGroupedData | Man page Source code |
| plot.nfnGroupedData | Man page Source code |
| plot.nls | Man page Source code |
| plot.nmGroupedData | Man page Source code |
| plot.pdMat | Man page Source code |
| plot.ranef.lmList | Man page |
| plot.ranef.lme | Man page |
| plot.simulate.lme | Man page Source code |
| pooledSD | Man page Source code |
| predict.gls | Man page |
| predict.gnls | Man page Source code |
| predict.lmList | Man page |
| predict.lme | Man page |
| predict.nlme | Man page Source code |
| print.VarCorr.lme | Man page Source code |
| print.VarCov | Man page Source code |
| print.anova.lme | Man page |
| print.compareFits | Man page |
| print.corCompSymm | Source code |
| print.corNatural | Man page Source code |
| print.corStruct | Source code |
| print.corSymm | Source code |
| print.groupedData | Source code |
| print.intervals.gls | Man page |
| print.intervals.lmList | Man page |
| print.intervals.lme | Man page |
| print.lmList | Man page |
| print.modelStruct | Source code |
| print.pdMat | Source code |
| print.ranef | Man page |
| print.ranef.lme | Man page |
| print.reStruct | Man page Source code |
| print.simulate.lme | Man page Source code |
| print.summary.corNatural | Source code |
| print.summary.corStruct | Source code |
| print.summary.corSymm | Source code |
| print.summary.lme | Man page |
| print.summary.modelStruct | Source code |
| print.summary.pdMat | Man page Source code |
| print.summary.varFixed | Source code |
| print.summary.varFunc | Source code |
| print.varComb | Man page |
| print.varFunc | Man page Source code |
| qqnorm.gls | Man page |
| qqnorm.lm | Man page |
| qqnorm.lmList | Man page |
| qqnorm.lme | Man page |
| qqnorm.nls | Man page |
| quinModel | Man page Source code |
| random.effects | Man page |
| random.effects.lmList | Man page |
| random.effects.lme | Man page |
| ranef | Man page |
| ranef.lmList | Man page |
| ranef.lme | Man page |
| reStruct | Man page Source code |
| recalc | Man page |
| recalc.corAR1 | Man page Source code |
| recalc.corARMA | Man page Source code |
| recalc.corCAR1 | Man page Source code |
| recalc.corCompSymm | Man page Source code |
| recalc.corHF | Man page |
| recalc.corIdent | Man page Source code |
| recalc.corNatural | Man page Source code |
| recalc.corSpatial | Man page Source code |
| recalc.corStruct | Man page Source code |
| recalc.corSymm | Man page Source code |
| recalc.modelStruct | Man page Source code |
| recalc.reStruct | Man page Source code |
| recalc.varFunc | Man page Source code |
| recalc.varIdent | Man page Source code |
| residuals.gls | Man page |
| residuals.glsStruct | Man page |
| residuals.gnls | Man page |
| residuals.gnlsStruct | Man page Source code |
| residuals.lmList | Man page |
| residuals.lme | Man page |
| residuals.lmeStruct | Man page |
| residuals.nlmeStruct | Man page Source code |
| sigma.lmList | Source code |
| sigma.lme | Source code |
| simulate.lme | Man page Source code |
| solve.pdBlocked | Man page Source code |
| solve.pdDiag | Man page Source code |
| solve.pdIdent | Man page Source code |
| solve.pdLogChol | Man page Source code |
| solve.pdMat | Man page Source code |
| solve.pdNatural | Man page Source code |
| solve.pdSymm | Man page Source code |
| solve.reStruct | Man page Source code |
| splitFormula | Man page |
| str.pdMat | Source code |
| summary.corAR1 | Man page Source code |
| summary.corARMA | Man page Source code |
| summary.corCAR1 | Man page Source code |
| summary.corCompSymm | Man page Source code |
| summary.corExp | Man page Source code |
| summary.corGaus | Man page Source code |
| summary.corIdent | Man page Source code |
| summary.corLin | Man page Source code |
| summary.corNatural | Man page Source code |
| summary.corRatio | Man page Source code |
| summary.corSpher | Man page Source code |
| summary.corStruct | Man page Source code |
| summary.corSymm | Man page Source code |
| summary.gls | Man page |
| summary.lmList | Man page |
| summary.lme | Man page |
| summary.modelStruct | Man page Source code |
| summary.nlsList | Man page Source code |
| summary.pdBlocked | Man page Source code |
| summary.pdCompSymm | Man page Source code |
| summary.pdDiag | Man page Source code |
| summary.pdIdent | Man page Source code |
| summary.pdLogChol | Man page Source code |
| summary.pdMat | Man page Source code |
| summary.pdNatural | Man page Source code |
| summary.pdSymm | Man page Source code |
| summary.reStruct | Man page Source code |
| summary.varComb | Man page |
| summary.varConstPower | Man page |
| summary.varConstProp | Man page |
| summary.varExp | Man page |
| summary.varFixed | Man page Source code |
| summary.varFunc | Man page Source code |
| summary.varIdent | Man page Source code |
| summary.varPower | Man page |
| svd.d | Source code |
| update.corStruct | Man page Source code |
| update.gls | Man page |
| update.gnls | Man page |
| update.groupedData | Man page Source code |
| update.lmList | Man page |
| update.lme | Man page |
| update.modelStruct | Man page Source code |
| update.nlsList | Man page |
| update.reStruct | Man page Source code |
| update.varComb | Man page |
| update.varConstPower | Man page |
| update.varConstProp | Man page |
| update.varExp | Man page |
| update.varExpon | Man page |
| update.varFunc | Man page Source code |
| update.varPower | Man page |
| varClasses | Man page |
| varComb | Man page |
| varConstPower | Man page |
| varConstProp | Man page |
| varExp | Man page |
| varFixed | Man page Source code |
| varFunc | Man page |
| varIdent | Man page Source code |
| varPower | Man page Source code |
| varWeights | Man page |
| varWeights.glsStruct | Man page |
| varWeights.lmeStruct | Man page |
| varWeights.varComb | Man page |
| varWeights.varFunc | Man page Source code |
