Files in bedapub/ribiosPlot
Plotting module of ribios for visualization
.Rbuildignore
.github/workflows/standard-ci-workflow.yml
.gitignore
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/AllClasses.R
R/AllMethods.R
R/PCAScoreMatrix.R
R/biosHeatmap.R
R/cascadePlot.R
R/colors.R
R/compactTrellis.R
R/ellipse.R
R/expVar.R
R/fcol.R
R/figurePanel.R
R/ggSmoothScatter.R
R/hist.R
R/jitter.xyplot.R
R/openFileDevice.R
R/p2asterisk.R
R/pairs.R
R/pcaPlots.R
R/plotVenn.R
R/ribiosPlot-package.R
R/robustdist.R
R/utils.R
R/vennMembers.R
README.md
inst/Rscript/boxplot.Rscript
inst/Rscript/coverage-plot.Rscript
inst/Rscript/geneset_xyplot.Rscript
inst/Rscript/scatterplot.Rscript
inst/Rscript/test_biosHeatmap.bash
inst/extdata/lmExample.txt
inst/extdata/test-coverage-plot-featureInfo.txt
inst/extdata/test-coverage-plot-input.txt
inst/extdata/test-coverage-plot-sampleInfo.txt
inst/extdata/test-exprs-boxplot.gct
inst/extdata/test-exprs-boxplot.txt
inst/extdata/test-scatterplot-oneClass.txt
inst/extdata/test_geneset_xyplot.txt
inst/extdata/test_scatterplot.txt
man/PCAScoreMatrix.Rd
man/as.data.frame.PCAScoreMatrix.Rd
man/as.matrix.PCAScoreMatrix.Rd
man/biosHeatmap.Rd
man/brewer.pal.factor.Rd
man/cascadeOrder.Rd
man/colorpanel.Rd
man/compactPar.Rd
man/compactTrellis.Rd
man/confEllipse.Rd
man/degree2radian.Rd
man/display.colorpanels.Rd
man/display.threecolor.panels.Rd
man/display.twocolor.panels.Rd
man/ellipse.Rd
man/expVar.Rd
man/expVarLabel.PCAScoreMatrix.Rd
man/expVarLabel.Rd
man/expVarLabel.prcomp.Rd
man/fcbase-set.Rd
man/fcbase.Rd
man/fcbrewer.Rd
man/fcol.Rd
man/figurePanel.Rd
man/getDefaultFontFamily.Rd
man/getExpVarLabel.Rd
man/getLims.Rd
man/ggSmoothScatter.Rd
man/ggSmoothScatterWithAux.Rd
man/guessWH.Rd
man/histMat.Rd
man/idev.Rd
man/intRange.Rd
man/jitter.xyplot.Rd
man/midCol.Rd
man/nonNegCascadeOrder.Rd
man/nonNull.Rd
man/openFileDevice.Rd
man/p2asterisk.Rd
man/panel.cor.Rd
man/panel.lmSmooth.Rd
man/pcaRotation.Rd
man/pcaScores.Rd
man/pcaScoresFromLogFC.Rd
man/pdf2png.Rd
man/plotPCA.Rd
man/plotPCA.prcomp.Rd
man/plotPCAloading.Rd
man/plotVenn.Rd
man/print.PCAScoreMatrix.Rd
man/print.fcol.Rd
man/qBreaks.Rd
man/qHist.Rd
man/radian2degree.Rd
man/reexports.Rd
man/ribiosPlot-package.Rd
man/robustDist.Rd
man/rowVars.Rd
man/royalbluered.Rd
man/setCompactTrellis.Rd
man/squareLayout.Rd
man/sub-.PCAScoreMatrix.Rd
man/symrange.Rd
man/threecolor.panels.Rd
man/twocolor.panels.Rd
man/vennMembersDataframe.Rd
man/vennMembersList.Rd
man/xclipHist.Rd
ribiosPlot.Rproj
tests/test-colors.R
tests/test-heatmap.R
tests/test_openFileDevice.R
tests/testthat.R
tests/testthat/test-PCAScoreMatrix.R
tests/testthat/test-ellipse.R
tests/testthat/test-expVar-prcomp.R
tests/testthat/test_vennMembers.R
vignettes/cascadePlot.Rmd
