Man pages for bernadette-eu/Bernadette
Bayesian Inference and Model Selection for Stochastic Epidemics
| age_distribution | Country-specific age distribution |
| age_specific_cusum_infection_counts | Age distribution of cumulative reported infections for Greece |
| age_specific_infection_counts | Age distribution of new reported infections for Greece |
| age_specific_mortality_counts | Age distribution of new reported deaths for Greece |
| aggregate_age_distribution | Aggregate the age distribution matrix |
| aggregate_contact_matrix | Aggregate a contact matrix |
| aggregate_ifr_react | Aggregate the Infection Fatality Ratio |
| Bernadette-package | Bayesian inference and model selection for stochastic... |
| contact_matrices | Contact matrices per country |
| contact_matrix | Country-specific contact matrix |
| countries_un | Names of countries with an available age distribution |
| country_contact_matrices | Names of countries for which a contact matrix is available |
| itd_distribution | Distribution of the time between infection and death |
| plot_age_distribution | Bar plot of the age distribution |
| plot_contact_matrix | Contact matrix heatmap |
| plot_posterior_cm | Plot the posterior contact matrix |
| plot_posterior_infections | Plot the posterior distribution of the infection counts |
| plot_posterior_mortality | Plot the posterior distribution of the mortality counts |
| plot_posterior_rt | Plot the estimated effective reproduction number trajectory |
| plot_posterior_transmrate | Plot the estimated age-specific transmission rate |
| posterior_infections | Summarize the posterior distribution of the infection counts |
| posterior_mortality | Summarize the posterior distribution of the mortality counts |
| posterior_rt | Estimate the effective reproduction number with the next... |
| posterior_transmrate | Estimate the age-specific transmission rate |
| priors | Prior distributions and options |
| stan_igbm | Bayesian diffusion-driven multi-type epidemic models via Stan |
| summary.stanigbm | Summary of stanigbm posterior output |
