Files in bigbio/pquantR
Downstream analysis of proteomics data
.Rbuildignore
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
README.md
data/MSstats_output.csv
data/NAME_analytics.csv
data/NAME_configuration.xml
data/PXD005571.sdrf.tsv
data/PXD012431.sdrf.tsv
data/PXD015270/MSstats_output.csv
data/PXD015270/NAME_configuration.xml
data/PXD015270/PXD015270-cell-lines.sdrf.tsv
data/PXD015270/g_g_name.txt
data/PXD015270/out.mztab.REMOVED.git-id
data/PXD015270/out_msstats.csv
data/PXD015270/out_proteus.csv.REMOVED.git-id
data/PXD015270/pep.csv.REMOVED.git-id
data/PXD015270/pheatmap_input.csv
data/PXD015270/protein_expression.csv
data/PXD015270/result_1.csv.REMOVED.git-id
data/PXD015270/sessionInfo.txt
data/g_g_name.txt
data/out_msstats.csv.REMOVED.git-id
data/pheatmap_input.csv
data/protein_expression.csv
imgs/data-1.png
imgs/data-2.png
imgs/data-3.png
imgs/data-4.png
imgs/dynamic-1.png
imgs/dynamic-2.png
imgs/home.png
imgs/msstats-1.png
imgs/msstats-2.png
output/msstats/UPS1ComparisonPlot.pdf
output/msstats/UPS1ConditionPlot.pdf
output/msstats/UPS1Heatmap.pdf
output/msstats/UPS1ProfilePlot.pdf
output/msstats/UPS1ProfilePlot_wSummarization.pdf
output/msstats/UPS1QCPlot.pdf
output/msstats/UPS1QQPlot.pdf
output/msstats/UPS1ResidualPlot.pdf
output/msstats/UPS1VolcanoPlot.pdf
output/proteus/proteus-UPS1_fid.pdf
output/proteus/proteus-UPS1_pval_distribution.pdf
output/proteus/proteus-UPS1_volcano.pdf
pquantR.Rproj
pquantr/app.R
pquantr/app/FID_live.R
pquantr/app/TMT_plots.R
pquantr/app/getSelector.R
pquantr/app/get_analytics.R
pquantr/app/proteus_plots.R
pquantr/app/volcano_live.R
pquantr/www/annotation_example.png
pquantr/www/data/out_msstats_example.csv
pquantr/www/pipeline.png
py/MSstatas_pheatmap.py
py/generate_configuration_xml.py
py/get_proteus_evidence.py
rscripts/consensus.R
rscripts/functions.R
rscripts/msstats_pipeline.R
rscripts/msstats_plfq.R
rscripts/proteus_pipeline.R
rscripts/test_proteus.R
shiny-server.conf
shiny-server.sh
