API for bihealth/metaquac
Metabolomics Targeted Quality Control
| Global functions | |
|---|---|
| calc_compound_na_variable | Source code |
| calc_sequence_x_breaks | Source code |
| check_required_columns | Source code |
| complete_missing_compounds | Source code |
| compound_variability_scoring | Source code |
| count_status | Source code |
| create_qc_report | Man page Source code |
| discard_unreliable_measurements | Source code |
| easy_datatable | Source code |
| extract_metadata | Source code |
| format_pvalue | Source code |
| getAbsolutePathWithNames | Source code |
| get_file_extension | Source code |
| get_sample_duplicates | Source code |
| gg_color_hue | Source code |
| handle_duplicate_headers | Source code |
| import_biocrates_pair | Source code |
| import_biocrates_unit | Source code |
| import_generic_table | Source code |
| import_generic_table_set | Source code |
| import_known_compounds | Source code |
| import_metadata | Source code |
| import_metidq_tables | Source code |
| import_q500_urine_limits | Source code |
| impute_half_lod | Source code |
| impute_half_min | Source code |
| impute_knn | Source code |
| impute_median | Source code |
| init_dynamic_global_variables | Source code |
| modify_metadata_names | Source code |
| modify_metadata_values | Source code |
| na_count | Source code |
| na_percent | Source code |
| na_ratio | Source code |
| normalize_by_average | Source code |
| normalize_by_linear_fit | Source code |
| normalize_pqn | Source code |
| plot_bio_replicate_rsd | Source code |
| plot_compound_na_scatter | Source code |
| plot_compound_na_variable_bars | Source code |
| plot_compound_rsd_vs_mean | Source code |
| plot_compound_scatter | Source code |
| plot_compound_sd_vs_mean | Source code |
| plot_concentration_box | Source code |
| plot_concentration_violin | Source code |
| plot_heatmap | Source code |
| plot_heatmap_fluc_features | Source code |
| plot_histogram_matrix | Source code |
| plot_na_histogram | Source code |
| plot_pca | Source code |
| plot_replicate_dispersion | Source code |
| plot_rsd_points | Source code |
| plot_rsd_versus | Source code |
| plot_sample_heatmap | Source code |
| plot_sample_na_intens_scatter | Source code |
| plot_sample_profiles_box | Source code |
| plot_sample_profiles_points | Source code |
| plot_sample_profiles_single | Source code |
| plot_sample_scatter_matrix | Source code |
| plot_sample_variability_overlapped | Source code |
| plot_sample_variability_sequential | Source code |
| plot_sequence_overview | Source code |
| plot_sequence_overview_mv | Source code |
| plot_sequence_overview_total | Source code |
| plot_status_heatmap | Source code |
| plot_status_profile | Source code |
| plot_study_variables_profile | Source code |
| plot_well_plate_overview | Source code |
| plot_well_plate_overview_mv | Source code |
| plot_well_plate_overview_total | Source code |
| preprocess_metidq_tables | Source code |
| quotemeta | Source code |
| recursive_execution | Source code |
| remove_compounds_na | Source code |
| remove_compounds_na_class | Source code |
| remove_compounds_rsd | Source code |
| remove_compounds_rsd_low | Source code |
| remove_samples_na | Source code |
| round_pvalues | Source code |
| rsd | Source code |
| sample_qqplot | Source code |
| sequence_batch_assistant_plots | Source code |
| sequence_batch_conformity | Source code |
| sequence_batch_horizontality | Source code |
| table_bio_replicate_rsd | Source code |
| table_mod_pvalue | Source code |
| table_mod_round | Source code |
| table_na | Source code |
| test_files | Source code |
| trim_pvalues | Source code |
| unify_missing_values | Source code |
| wide_conc_table_compounds_x_samples | Source code |
| zero_to_na | Source code |
