Files in bioDS/beter
BEAST Templates in R
.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/list2toml.r
R/list_utils.r
R/merge_lists.r
R/options.r
R/parse_config.r
R/process_template.r
R/read_sequences.r
R/sequences.r
R/utils.r
R/write_config.r
R/write_sequences.r
README.md
_pkgdown.yml
man/basename_sans_ext.Rd
man/beter_options.Rd
man/find_tags.Rd
man/format_list.Rd
man/guess_datatype.Rd
man/guess_number_of_states.Rd
man/is.empty.Rd
man/join.Rd
man/list2toml.Rd
man/merge.Rd
man/mkdir.Rd
man/parse_config.Rd
man/process_subtemplates.Rd
man/process_template.Rd
man/process_xml_chunks.Rd
man/read_sequences.Rd
man/read_sequences_helper.Rd
man/sequences2xml.Rd
man/settmpdir.Rd
man/sort_named_list.Rd
man/write_config.Rd
man/write_sequences.Rd
tests/testthat.r
tests/testthat/helper-config.r
tests/testthat/helper-functions.r
tests/testthat/helper-sequences.r
tests/testthat/helper-toml.r
tests/testthat/test-list2toml.r
tests/testthat/test-list_utils.r
tests/testthat/test-merge_lists.r
tests/testthat/test-parse_config.r
tests/testthat/test-process_template.r
tests/testthat/test-read_sequences.r
tests/testthat/test-sequences.r
tests/testthat/test-utils.r
tests/testthat/test-write_config.r
tests/testthat/test-write_sequences.r
tests/testthat/test_files/lowercase.fasta
tests/testthat/test_files/lowercase.nex
tests/testthat/test_files/mixed.fasta
tests/testthat/test_files/mixed.nex
tests/testthat/test_files/primates.fasta
tests/testthat/test_files/primates.nex
tests/testthat/test_files/primates.xml
tests/testthat/test_files/primates_template.xml
tests/testthat/test_files/test.toml
tests/testthat/test_files/test.xml
tests/testthat/test_files/test_processed.xml
tests/testthat/test_files/uppercase.fasta
tests/testthat/test_files/uppercase.nex
unfinished/seqgen.r
unfinished/simulate.r
unfinished/templates/BEAST.xml
unfinished/templates/HKY.toml
unfinished/templates/MHKY.toml
unfinished/templates/alignment.toml
unfinished/templates/clock_models/relaxed_lognormal.xml
unfinished/templates/clock_models/strict.toml
unfinished/templates/pop_models/constant.toml
unfinished/templates/seqgen.xml
unfinished/templates/subst_models/hky.toml
unfinished/templates/subst_models/mhky.toml
vignettes/beter.Rmd
vignettes/config.Rmd
