API for biobakery/sparseDOSSA
Sparse Data Observations for Simulating Synthetic Abundance
| Global functions | |
|---|---|
| funcCalibrateRLNormToMicrobiome | Source code |
| funcEstimateFeatureSD | Source code |
| funcEstimateGrandSD | Source code |
| funcEstimatePercentZero | Source code |
| funcForceMinCountsInMinSamples | Source code |
| funcGenerateExpVectorParameters | Source code |
| funcGenerateFeatureParameters | Source code |
| funcGetExp | Source code |
| funcGetMu | Source code |
| funcGetParamsForReadDepth | Source code |
| funcGetRowMetric | Source code |
| funcGetSD | Source code |
| funcIsFactorMetadataValid | Source code |
| funcMakeFeature | Source code |
| funcNormalizeMicrobiome | Source code |
| funcNumericIsInt | Source code |
| funcPrepareMetadata | Source code |
| funcQCSpikin | Source code |
| funcRoundMatrix | Source code |
| funcSample | Source code |
| funcShuffleMatrix | Source code |
| funcSpikeNewBug | Source code |
| funcSpikeNewBug_new | Source code |
| funcTruncatedRLNorm | Source code |
| funcUpdateDistributionToExpectation | Source code |
| funcUpdateDistributionToSum | Source code |
| func_generate_metadata | Source code |
| func_generate_random_lognormal_matrix | Source code |
| func_generate_random_lognormal_with_multivariate_spikes | Source code |
| func_generate_random_lognormal_with_outliers | Source code |
| func_generate_spike_structure | Source code |
| func_get_log_corr_mat_from_file | Source code |
| func_get_log_corr_mat_from_num | Source code |
| func_list_to_str | Source code |
| func_zero_inflate | Source code |
| sparseDOSSA | Man page Source code |
