API for biobenkj/ATACseeker
Utilities for ATACseq QC, differential accessibility, and integration
| Global functions | |
|---|---|
| ATACseeker | Man page |
| ATACseeker-package | Man page |
| atacPairedEnd | Man page Source code |
| collectStats | Man page Source code |
| estK | Man page Source code |
| fragPlot | Man page Source code |
| fragmentLengths | Man page Source code |
| get5primeCuts | Man page Source code |
| getComplexity | Man page Source code |
| getEnds | Man page Source code |
| getEsts | Man page Source code |
| getFeatureCounts | Man page Source code |
| getQC | Man page Source code |
| plotComplexity | Man page Source code |
| plotCoverage | Man page Source code |
| plotStranded | Man page Source code |
| processUcscCytoband | Man page Source code |
| properPairedEndAtacFilters | Source code |
| ruvNorm | Man page Source code |
| shrinkPairs | Man page Source code |
| spikeInFilters | Source code |
| tssQcPlot | Man page Source code |
| uniquePairedEndAtacFilters | Source code |
