Man pages for brentscott93/biophysr
Analysis tools for muscle biophysics
| add_relative_velocity | Add relative velocity columns to motility data |
| analyze_cardiac_motility | Analyze cardiac motility |
| analyze_mini_ensemble | Analyze Mini Ensemble Data - Finds Event Duration, Force, and... |
| analyze_motility | Analyze motility data |
| app | Launch App |
| bin_plot | Histogram plot from binned velocity data |
| c1v1 | Dilution/Concentration Calculator |
| conc_calc | Dilution/Concentration Calculator |
| count_events | Count HMM Events |
| detrend_trap | Drift Correction for Laser Trapping Data |
| drc.duty_ratio | Dutio ratio self-starter (fct) for drm |
| drc.michaelis_menten | Michaelis Menten self-starter (fct) for drm w/custom param... |
| drc.xDP_release_xTP_binding | xDP-release, xTP-binding self-starter (fct) for drm |
| drive_downread | Download and read google drive file (read_sheets is sooo... |
| drive_hidden_markov_analysis_shiny | HMM Analysis |
| drive_make_trap_observations_shiny | Make Trap Observations |
| drive_writeup | Write file to temp. directory and upload to google drive |
| dygraph_clean_shave | Creates a dygraph to clean trap data in shiny |
| dygraph_trim_and_shave | Creates a dygraph to clean trap data in shiny |
| ensemble_average | Forward & Backward Ensemble Averages |
| equipartition | Equipartition method for calibrating trap stiffness |
| event_frequency | Calculate 'real-time' event frequency of laser trapping data |
| extract_coef | Fit Hill Equation to nested data |
| find_peaks | Find Peaks Function from... |
| fit_exp | Fit Exponential Distribution |
| fit_hill | Fits Hill Equation |
| fit_hill_nest | Fit Hill Equation to Nested Data |
| fit_hill_nest_pm | Fit Hill Equation to percent moving nested data |
| fit_hill_pm | Fits Hill Equation to percent moving data |
| fit_hmm | Fit HMM |
| format_dropbox_path | Formats dropbox path for shiny upload |
| get_coefficients | Make tibble of Hill Equation parameters from a fitted drm... |
| group_files | Group files for windows |
| gui | Runs GUI |
| hidden_markov_analysis | HMM Analysis |
| hidden_markov_analysis_shiny | HMM Analysis |
| histo_plotly | Create Plotly Histograms |
| identify_mini_events | Identifies mini ensemble events (>10nm, >10ms) |
| import_processed_trap | Import processed trapping data files |
| import_shiny | Import Files to R Shiny |
| import_tsv | Import .tsv files |
| import_xls | Import .xls files |
| list_dir | List folders into tibble |
| list_files | Lists files into a tibble |
| make_trap_observations | Make Trap Observations |
| make_trap_observations_shiny | Make Trap Observations |
| measure_events | Measure single molecule events detected by Hidden Markov... |
| measure_mini | Measure ton and toff for mini ensemble data |
| measure_mini_rescaled | Measure ton and toff for mini ensemble data |
| mini_ensemble_analyzer | Mini Ensemble Analysis |
| mini_ensemble_analyzer_gui | Mini Ensemble Analysis for GUI |
| mini_ensemble_analyzer_shiny | Mini Ensemble analyzer for shiny |
| mini_find_true_end | Find first data point not in mini ensemble event |
| mini_rescale_start | Find better event start |
| plot_analyze_mini_ensemble | Analyze Mini Ensemble Data - Finds Event Duration, Force, and... |
| plot_distr | Quick histogram plotting |
| plot_motility | Plot a single velocity-pCa curve |
| plot_motility2 | Plot motility data for 2 velocity-pCa curves |
| possibly_hill_nest | Determime if Hill Equation can be fit |
| possibly_hill_nest_pm | Fit Hill Equation to Nested Percent Moving Data |
| predict_hill | Make Hill Equation predictions for plotting |
| predict_mm | Make MM Equation predictions for plotting |
| round_any | Round to any integer from... |
| running_mv | Calulate Running Mean and Variance |
| sheets_group | Group sheets on Google Drive |
| shiny_clean_dygraph | Generate dygraph for cleaning trap data in shiny |
| shiny_hidden_markov_analysis | Hidden Markov for Shiny |
| shiny_make_trap_observations | Make Trap Observations |
| shiny_mini_ensemble_analyzer | Mini-ensemble Analyzer |
| shiny_move_trap | Move trap files to new observations |
| shiny_summarize_trap | Summarize trap project (shiny app) |
| shiny_trap_upload | Move trap files (.txt) to Box Sync folder |
| shiny_trim_dygraph | Trim trap grouped4r file in shiny |
| simulate_trap | Simulate Laser Trap Data |
| simulate_trap_custom | Simulate Laser Trap Data |
| simulation_drive_hidden_markov_analysis_shiny | HMM Analysis |
| squysh_time | Prints the system date/time in only numbers (no spaces or... |
| step_cal | Performs Step Calibration of the Laser Trap |
| summarize_mini_events | Summarize Mini Ensemble Event |
| summarize_motility | Summarize output from 'analyze_motility' |
| summarize_trap_shiny | Summarize Trap Analysis for Shiny |
| theme_ppt | ggplot2 theme for powerpoint presentations |
| upload_trap_shiny | Upload trap files (.txt) to google drive as sheets |
| write_temp_csv | Writes temporary (.csv) file |
| write_temp_tsv | Writes temporary (.tsv) file |
