Man pages for briangottfried/epivizrChart
R interface to epiviz web components
| append_region-methods | Generic method to add navigation regions |
| bcode_eset | Example expression data from the Gene Expression barcode... |
| BlocksTrack-methods | Method to add Blocks Track |
| cgi_gr | Locations of CpG Islands |
| chart_default_settings_colors | Get default chart settings and colors |
| dot-constructURL | Construct URL for Websocket connection between R and UI |
| dot-initialize_chart | Initialize Epiviz Chart based on chart type |
| dot-register_all_the_epiviz_things | (taken from epivizr) register epiviz actions |
| dot-settings_as_df | (taken from epivizr) print settings in a readable format |
| EpivizBlocksTrack-class | Data container for an Epiviz Blocks Track. |
| epivizChart | Initialize an 'EpivizChart' object to visualize in viewer or... |
| EpivizChart-class | Data container for an Epiviz chart component. |
| EpivizChartDataMgr-class | Class providing data manager for epiviz charts. |
| EpivizDataSource-class | Data container for an Epiviz Data Source component. |
| epivizEnv | Initialize an 'EpivizEnvironment' object. |
| EpivizEnvironment-class | Data container for an Epiviz environment component. |
| EpivizGenesTrack-class | Data container for an Epiviz Genes Track. |
| EpivizHeatmapPlot-class | Data container for an Epiviz Heatmap Plot. |
| EpivizIGVTrack-class | Data container for an Epiviz Genes Track. |
| EpivizLinePlot-class | Data container for an Epiviz Line Plot. |
| EpivizLineTrack-class | Data container for an Epiviz Line Track. |
| epivizNav | Initialize an 'EpivizNavigation' object to visualize in... |
| EpivizNavigation-class | Data container for an Epiviz navigation component. |
| EpivizScatterPlot-class | Data container for an Epiviz Scatter Plot. |
| EpivizStackedBlocksTrack-class | Data container for an Epiviz Blocks Track. |
| EpivizStackedLinePlot-class | Data container for an Epiviz Stacked Line Plot. |
| EpivizStackedLineTrack-class | Data container for an Epiviz Stacked Line Track. |
| EpivizViewComponent-class | Data container for an Epiviz web component. |
| EpivizWebComponent-class | Data container for an Epiviz Web component. |
| get_available_chart_types | Construct URL for Websocket connection between R and UI |
| get_registered_data_types | Construct URL for Websocket connection between R and UI |
| HeatmapPlot-methods | Method to add Heatmap Plot |
| json_parser | JSON parser used by this package |
| json_writer | JSON writer used by this package |
| LinePlot-methods | Method to add Line Plot |
| LineTrack-methods | Method to add Line Track |
| plot-EpivizEnvironment-ANY-method | Generic methods to plot charts and add navigation regions |
| rand_id | Random ID generator for epiviz charts |
| ScatterPlot-methods | Method to add Scatter Plot |
| StackedBlocksTrack-methods | Method to add Stacked Blocks Track |
| StackedLinePlot-methods | Method to add Stacked Line Plot |
| StackedLineTrack-methods | Method to add Stacked Line Track |
| sumexp | Example SummarizedExperiment for epivizr vignette |
| tcga_colon_blocks | Example methylation data (blocks) for epivizr vignette. |
| tcga_colon_curves | Example methylation data (smoothed methylation levels) for... |
| tcga_colon_expression | Example exon-level RNAseq data from TCGA project for epivizr... |
