Files in brouwern/dayoff
Bioinformatics in R
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/aa_chars.R
R/aa_chars_subset.R
R/dayoff-package.R
R/dengueseq_fasta.R
R/diag_show.R
R/fasta_cleaner.R
R/hShroom2.R
R/hShroom3.R
R/mShroom3a.R
R/pams.R
R/sShroom.R
R/score_alignment.R
R/shroom_table.R
R/tri_print.R
R/tutor_open.R
R/tutor_show.R
R/update_dayoff.R
README.md
_pkgdown.yml
data-raw/Higgs_2009_amino_acids_properties.csv
data-raw/download_shroom_seqs.R
data-raw/mRNA_initiation.csv
data-raw/make_Higgs2009_data.R
data-raw/make_dengueseq_fasta.R
data-raw/make_mRNA_initiation.R
data-raw/make_shroom_table.R
data-raw/pevsner3.csv
data-raw/pevsner3.pdf
data-raw/pevsner3_fig3_13.csv
data-raw/pevsner3_fig3_14.csv
data-raw/pevsner3_fig3_15.csv
data-raw/pevsner3_fig3_8.csv
data-raw/pevsner3_fig3_9.csv
data-raw/pevsner_ch3_dayoff_martices.R
data/aa_chars.rda
data/aa_chars_subset.rda
data/dengueseq_fasta.rda
data/hShroom2.rda
data/hShroom3.rda
data/mShroom3a.rda
data/pams.rda
data/sShroom.rda
data/shroom_table.rda
dayoff.Rproj
docs/404.html
docs/LICENSE.html
docs/articles/a01-preface.html
docs/articles/a01-preface_to_dayhoff.html
docs/articles/a02-loading_dayoff_tutorials.html
docs/articles/a02-loading_tutorials.html
docs/articles/b01-organization_of_package_AC01.html
docs/articles/b02-downloading_R_AC01.html
docs/articles/b03-installing_RStudio_AC01.html
docs/articles/b04-installing_packages_in_RStudio_AC01.html
docs/articles/b05-installing_bioconductor_AC01.html
docs/articles/b06-brief_intro_to_R_AC01.html
docs/articles/c01-NCBI_by_GUI2_AC0x.html
docs/articles/c01_unprot_by_GUI-AC07.html
docs/articles/c02-NCBI_by_GUI_AC03.html
docs/articles/c03_unprot_by_GUI-AC07.html
docs/articles/index.html
docs/articles/x-creating_a_package.html
docs/articles/y-building_a_package.html
docs/articles/z-build_and_rebuild_package.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/aa_chars.html
docs/reference/aa_chars_subset.html
docs/reference/dayoff-package.html
docs/reference/dengueseq_fasta.html
docs/reference/diag_show.html
docs/reference/fasta_cleaner.html
docs/reference/hShroom2.html
docs/reference/hShroom3.html
docs/reference/index.html
docs/reference/mShroom3a.html
docs/reference/pams.html
docs/reference/sShroom.html
docs/reference/score_alignment.html
docs/reference/shroom_table.html
docs/reference/tri_print.html
docs/reference/tutor_open.html
docs/reference/tutor_show.html
docs/reference/update_dayoff.html
inst/extdata/A0PQ23.fasta
inst/extdata/Q9CD83.fasta
inst/extdata/aa_chars_subset
inst/extdata/aa_chars_subset.dat
inst/extdata/dengueseq.fasta
inst/rebuild_package_script.R
inst/tutorials/AC03-01-downloading_DNA_seq_in_R.Rmd
inst/tutorials/AC03-02-DNA_sequence_descriptive_stats.Rmd
inst/tutorials/AC04-01-vectors.Rmd
inst/tutorials/AC04-02-programming_in_R.Rmd
inst/tutorials/NLB_alignment.Rmd
inst/tutorials/NLB_worked_example_build_phylo.Rmd
inst/tutorials/Pevsner_Ch4_figure4_12.Rmd
inst/tutorials/Pevsner_Ch4_figure4_14.Rmd
inst/tutorials/Pevsner_Ch4_figure4_14_extension.Rmd
inst/tutorials/data_frame_by_hand.Rmd
inst/tutorials/data_frame_by_hand_problem_set.Rmd
inst/tutorials/dayhoff_PAM_matrices.Rmd
inst/tutorials/live_code_blast_via_R.Rmd
inst/tutorials/test_tutorial.Rmd
man/aa_chars.Rd
man/aa_chars_subset.Rd
man/dayoff-package.Rd
man/dengueseq_fasta.Rd
man/diag_show.Rd
man/fasta_cleaner.Rd
man/hShroom2.Rd
man/hShroom3.Rd
man/mShroom3a.Rd
man/pams.Rd
man/sShroom.Rd
man/score_alignment.Rd
man/shroom_table.Rd
man/tri_print.Rd
man/tutor_open.Rd
man/tutor_show.Rd
man/update_dayoff.Rd
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