bstatcomp/project-cpath: R package for Temporal progression modelling using stan with GPU support
The package is a R wrapper for a temporal progression model based on a generalized logistic curve with patient and study random effects on progression baseline and progression rate. The model also supports an arbitrary number of covariates linked with baseline and rate with a linear term and an additional 2-parameter Bateman-type (equlibriation and elimination rate) placebo term. The package uses Stan (cmdstan) for the back-end estimation. It is tailored specifically to be used on C-Path disease data. The modifications to stan include explicit derivation of the model derivative implemented in C++ and OpenCL to achieve maximum performance.
Getting started
Browse package contents
Package details |
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| Author | Davor Sluga, Rok Cešnovar, Gregor Pirš, Erik Štrumbelj, Jackson Burton |
| Maintainer | The package maintainer <davor.sluga@fri.uni-lj.si> |
| License | BSD-3 |
| Version | 0.1.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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