Man pages for buddha2490/BERGMets
Metabolomics data and analysis in the BERG
| breast_metabolomics | Breast cancer metabolomics file |
| corMatrix | Calculates a correlation matrix adjusting for covariates |
| getAUC | Calculates AUC for a logistic regression. |
| getID | Pulls IDs from the metabolite files and optionally write to a... |
| getMetabolites | Loads and/or subsets metabolite data. |
| icc9 | R Version of the ICC9 SAS Macro |
| makeSAS | Creates a SAS datafile from metabolomics data |
| metsAssoc | Basic metabolomics association analysis. |
| metsBoxplot | Creates layered boxplots of metabolite values across a class... |
| metsHeatmap | Creates a correlation heatmap using ggplot2 syntax |
| metsInt | Stratified and interaction metabolite association models |
| metsModels | Wrapper function that will run association, interaction, or... |
| metsROC | Creates ROC curves using ggplot() |
| normalizeMets | Normalize metabolite data prior to analyses |
| Parkinsons_C8 | CPS2 Parkinsons Disease Metabolomics - C8 platform |
| Parkinsons_HILICNEG | CPS2 Parkinsons Disease Metabolomics - HILIC-Pos platform |
| Parkinsons_HILICPOS | CPS2 Parkinsons Disease Metabolomics - HILIC-Pos platform |
| prostate_metabolomics | Prostate cancer metabolomics file |
| qc | Example dataset for documenting the icc9() function |
| survey | Sample covariate file used in metabolomics analyses |
| Validation_Blood | Metabolomics in the CPS3 validation study - Blood samples |
| Validation_Urine | Metabolomics in the CPS3 validation study - Urine samples |
