Man pages for c-mertes/FRASER
Find RAre Splicing Events in RNA-Seq Data
| annotateRanges | Annotates the given FraserDataSet with the HGNC symbol with... |
| assayNames-FraserDataSet-method | Returns the assayNames of FRASER |
| assays-FraserDataSet-method | Returns the assay for the given name/index of the... |
| calculatePSIValues | PSI value calculation |
| countRNA | Count RNA-seq data |
| counts | Getter/setter for count data |
| createTestFraserDataSet | Create a test dataset |
| fds-methods | Getter/Setter methods for the FraserDataSet |
| filtering | Filtering FraserDataSets |
| fit | Fitting the denoising autoencoder |
| FRASER | FRASER: Find RAre Splicing Events in RNA-seq data |
| FraserDataSet | The FRASER dataset object |
| FraserDataSet-class | FraserDataSet |
| getter_setter_functions | Getter/Setter functions |
| injectOutliers | Inject artificial outliers in an existing fds |
| length-FraserDataSet-method | retrieve the length of the object (aka number of junctions) |
| loadFraserDataSet | Loading/Saving FraserDataSets |
| makeSimulatedFraserDataSet | Create an simulated example data set for FRASER |
| mergeExternalData | Merge external data |
| optimHyperParams | Find optimal encoding dimension |
| plotFunctions | Visualization functions for FRASER |
| potentialImpactAnnotations | Additional result annotations |
| psiTypes | Available splice metrics |
| results | Extracting results and aberrant splicing events |
| subset | Subsetting by indices for junctions |
