Files in caleblareau/gchromVAR
Compute cell-type specific enrichments with high resolution
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/computeWeightedDeviations.R
R/gchromVAR.R
R/internal.R
R/io.R
README.md
_pkgdown.yml
docs/LICENSE.html
docs/articles/Introduction.html
docs/articles/gchromVAR_vignette.html
docs/articles/gchromVAR_vignette_cache/html/__packages
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-4_275208eac76f791072f4ebb894f0aa4d.RData
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-4_275208eac76f791072f4ebb894f0aa4d.rdb
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-4_275208eac76f791072f4ebb894f0aa4d.rdx
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-5_c5bce9ef8b386761f85136789642e6fb.RData
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-5_c5bce9ef8b386761f85136789642e6fb.rdb
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-5_c5bce9ef8b386761f85136789642e6fb.rdx
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-6_e1420283e6bfd55d637fa07935427384.RData
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-6_e1420283e6bfd55d637fa07935427384.rdb
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-6_e1420283e6bfd55d637fa07935427384.rdx
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-7_8b8374748c3913f1698f2c4fde2a7661.RData
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-7_8b8374748c3913f1698f2c4fde2a7661.rdb
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-7_8b8374748c3913f1698f2c4fde2a7661.rdx
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-8_6373f14e60302c88800d9a8c00e71628.RData
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-8_6373f14e60302c88800d9a8c00e71628.rdb
docs/articles/gchromVAR_vignette_cache/html/unnamed-chunk-8_6373f14e60302c88800d9a8c00e71628.rdx
docs/articles/index.html
docs/articles/maths-concordance.tex
docs/articles/maths.Rnw
docs/articles/maths.log
docs/articles/maths.pdf
docs/articles/maths.synctex.gz
docs/articles/maths.tex
docs/articles/media/logo.pdf
docs/articles/media/overview_Fig1.png
docs/articles/media/overview_Fig2.png
docs/articles/media/overview_Heme.png
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/computeWeightedDeviations.html
docs/reference/gchromVAR.html
docs/reference/importBedScore.html
docs/reference/index.html
gchromVAR.Rproj
inst/extdata/MCH_PP001.bed
inst/extdata/WBC_COUNT_PP001.bed
inst/extdata/paper/PP001/BASO_COUNT_PP001.bed
inst/extdata/paper/PP001/EO_COUNT_PP001.bed
inst/extdata/paper/PP001/HCT_PP001.bed
inst/extdata/paper/PP001/HGB_PP001.bed
inst/extdata/paper/PP001/LYMPH_COUNT_PP001.bed
inst/extdata/paper/PP001/MCHC_PP001.bed
inst/extdata/paper/PP001/MCH_PP001.bed
inst/extdata/paper/PP001/MCV_PP001.bed
inst/extdata/paper/PP001/MEAN_RETIC_VOL_PP001.bed
inst/extdata/paper/PP001/MONO_COUNT_PP001.bed
inst/extdata/paper/PP001/MPV_PP001.bed
inst/extdata/paper/PP001/NEUTRO_COUNT_PP001.bed
inst/extdata/paper/PP001/PLT_COUNT_PP001.bed
inst/extdata/paper/PP001/RBC_COUNT_PP001.bed
inst/extdata/paper/PP001/RETIC_COUNT_PP001.bed
inst/extdata/paper/PP001/WBC_COUNT_PP001.bed
inst/extdata/paper/hemeCounts.tsv.gz
inst/extdata/paper/hemePeaks.bed.gz
inst/rds/dev_humanSimple.rds
inst/rds/dev_mouseSimple.rds
inst/rds/mini_w.rds
man/computeWeightedDeviations.Rd
man/gchromVAR.Rd
man/importBedScore.Rd
tests/testthat.R
tests/testthat/test_gchromVAR.R
vignettes/gchromVAR_vignette.Rmd
vignettes/gchromVAR_vignette_cache/html/__packages
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-4_0bda2f6964cc325e83aac64c4b479753.RData
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-4_0bda2f6964cc325e83aac64c4b479753.rdb
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-4_0bda2f6964cc325e83aac64c4b479753.rdx
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-5_c5bce9ef8b386761f85136789642e6fb.RData
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-5_c5bce9ef8b386761f85136789642e6fb.rdb
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-5_c5bce9ef8b386761f85136789642e6fb.rdx
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-6_e1420283e6bfd55d637fa07935427384.RData
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-6_e1420283e6bfd55d637fa07935427384.rdb
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-6_e1420283e6bfd55d637fa07935427384.rdx
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-7_8b8374748c3913f1698f2c4fde2a7661.RData
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-7_8b8374748c3913f1698f2c4fde2a7661.rdb
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-7_8b8374748c3913f1698f2c4fde2a7661.rdx
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-8_6373f14e60302c88800d9a8c00e71628.RData
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-8_6373f14e60302c88800d9a8c00e71628.rdb
vignettes/gchromVAR_vignette_cache/html/unnamed-chunk-8_6373f14e60302c88800d9a8c00e71628.rdx
vignettes/maths-concordance.tex
vignettes/maths.Rnw
vignettes/maths.log
vignettes/maths.synctex.gz
vignettes/maths.tex
vignettes/media/logo.pdf
vignettes/media/overview_Fig1.png
vignettes/media/overview_Fig2.png
vignettes/media/overview_Heme.png
