Man pages for calliste-fagard-jenkin/GAI
Generalised Abundance Index for Seasonal Invertibrates
| bootstrap | Bootstrapping for GAI models |
| contains_covariates | Determine if a given parameter uses covariates |
| dzip | Zero-Inflated Poisson Density Evaluation |
| evaluate_splines | Spline model density evaluation. |
| evaluate_stopover | Stopover model density evaluation. |
| extract_counts | Extract a count matrix from a data.frame |
| fit_GAI | GAI model fitting |
| generate_mixture_pars | Generate random parameter values for non-spline models |
| generate_spline_pars | Generate random parameter values for spline models |
| get_cov_skeleton_and_DM | Obtain skeleton and Design Matrix |
| get_parameter_values | Obtain parameter values and handle covariate formulas |
| get_parameter_values_all_rows | Parameter value finding helper for covariate inclusion |
| logLik.GAI | Log likelihood extraction |
| lp_func | Parameter value finding helper for covariate inclusion |
| means_backtransform | Backtransform for means |
| means_link | Mean link function |
| mixture_nll | Normal mixture negative Log Likelihood |
| plot.GAI | GAI flight path plotting |
| print.summary.GAI | GAI model summary printing |
| probs_backtransform | Backtransform for weights |
| probs_link | Probability link function |
| produce_skeleton | Produce a skeleton for GAI parameters |
| profile_ll | Profile (concentrated) likelihood evaluation for GAI |
| rcpp_hello_world | Simple function using Rcpp |
| rGAI | rGAI: Generalised Abundance Index fitting for seasonal... |
| rzip | Zero-Inflated Poisson Random Number Generation |
| sim_n_mixture | Normal mixture sampling |
| simulate_data | Simulate data from the GAI |
| summary.GAI | GAI model summary |
| sum_to_one | Normalisation function |
| thin_NA | Introduce NAs into matrices |
| transform_bootstrap_parameters | Transforms bootstrap confidence intervals for custom... |
| transform_output | Parameter transformation |
| transform_starting_values | Transform starting values to the link scale |
