cansysbio/ConsensusTME: A Consensus Approach To Tumour Microenvironment Cell Estimation
ConsensusTME is a consensus based approach to generating cancer specific gene sets for multiple cell types found within the tumour microenvironment. This package allows access to these genesets and provides a wrapper for using these gene sets with various statistical frameworks to generate normalised enrichment scores. These can be used to identify relative quantities of cell types across multiple samples. This requires a bulk tumour gene expression profile as an input.
Getting started
Browse package contents
Package details |
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| Author | c(person("Oliver","Cast", email = "Oliver.Cast@cruk.cam.ac.uk", role = c("aut","cre")), person("Alejndro","JimenezSanchez", email = "Alejandro.JimenezSanchez@cruk.cam.ac.uk", role = c("aut"))) |
| Maintainer | Oliver Cast <Oliver.Cast@cruk.cam.ac.uk> |
| License | GPL-3 |
| Version | 0.0.1.9000 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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