Files in caravagnalab/ctree
ctree - Clone trees in cancer evolution
.DS_Store
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/CCF_trees_functions.R
R/S3_plot.R
R/S3_print.R
R/S3_summary.R
R/ctree.R
R/ctrees.R
R/data.R
R/information_transfer.R
R/lib_tree_generation.R
R/plot_CCF_clusters.R
R/plot_clone_size.R
R/plot_icon.R
R/plot_information_transfer.R
R/trees_sampler.R
R/utils_trees_getters.R
R/utils_trees_transformations.R
R/zzz.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
ctree.Rproj
data/ctree_input.rda
docs/404.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/ctree.html
docs/articles/ctree_files/figure-html/unnamed-chunk-10-1.png
docs/articles/ctree_files/figure-html/unnamed-chunk-10-2.png
docs/articles/ctree_files/figure-html/unnamed-chunk-11-1.png
docs/articles/ctree_files/figure-html/unnamed-chunk-12-1.png
docs/articles/ctree_files/figure-html/unnamed-chunk-13-1.png
docs/articles/index.html
docs/authors.html
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/ctree.html
docs/reference/ctree_input.html
docs/reference/ctrees-1.png
docs/reference/ctrees.html
docs/reference/figures/logo.png
docs/reference/index.html
docs/reference/plot.ctree-1.png
docs/reference/plot.ctree.html
docs/reference/plot_CCF_clusters-1.png
docs/reference/plot_CCF_clusters.html
docs/reference/plot_clone_size-1.png
docs/reference/plot_clone_size.html
docs/reference/plot_icon-1.png
docs/reference/plot_icon.html
docs/reference/plot_information_transfer-1.png
docs/reference/plot_information_transfer-2.png
docs/reference/plot_information_transfer.html
docs/reference/print.ctree.html
docs/reference/summary.ctree.html
man/ctree.Rd
man/ctree_input.Rd
man/ctrees.Rd
man/figures/logo.png
man/plot.ctree.Rd
man/plot_CCF_clusters.Rd
man/plot_clone_size.Rd
man/plot_icon.Rd
man/plot_information_transfer.Rd
man/print.ctree.Rd
man/summary.ctree.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/ctree.Rmd
vignettes/ctree.html
