API for cas-bioinf/covid19retrospective
What the Package Does (One Line, Title Case)
| Global functions | |
|---|---|
| auc | Source code |
| averageSamplingTime | Source code |
| bayesian_hypothesis_res_from_draws | Source code |
| bayesian_hypothesis_res_from_jm | Source code |
| brm_with_cache | Source code |
| brmhmm | Source code |
| brmshmmdata | Source code |
| calibration_intercept | Source code |
| calibration_slope | Source code |
| check_all_diagnostics | Source code |
| check_div | Source code |
| check_energy | Source code |
| check_n_eff | Source code |
| check_rhat | Source code |
| check_treedepth | Source code |
| compare_auc_to_orig | Source code |
| compute_all_transition_matrices | Source code |
| compute_counterfactual_outcome_samples | Source code |
| compute_derived_markers_wide | Source code |
| compute_derived_quantities_patients | Source code |
| compute_marker_peak | Source code |
| covid19retrospective | Man page |
| do_common_pp_checks | Source code |
| evaluate_all_params | Source code |
| evaluate_all_treatment_hypotheses | Source code |
| evaluate_single_param | Source code |
| evaluate_single_param_indices | Source code |
| evaluate_treatment_hypothesis | Source code |
| evaluation_summary | Source code |
| fake_data_grein | Man page Source code |
| frequentist_hypothesis_res_from_coxph | Source code |
| frequentist_hypothesis_res_from_coxph1 | Source code |
| get_data_version | Source code |
| hidden_to_corresponding_observed | Source code |
| hmm_simulator | Source code |
| impute_marker_constant | Source code |
| inv_logit | Source code |
| launch_shinystan_nonblocking | Source code |
| make_brms_formula_hmm | Source code |
| make_data_hmm | Source code |
| make_standata_hmm | Source code |
| mean_iqr | Source code |
| missing_arg | Source code |
| my_auc_summary | Source code |
| my_auc_summary_from_estimate | Source code |
| n_missing_args | Source code |
| net_benefit | Source code |
| net_benefit_bootstrap | Source code |
| normalize_stancode | Source code |
| oe_ratio | Source code |
| order_within_samples | Source code |
| partition_div | Source code |
| patients_sheet | Source code |
| plot_all_auc | Source code |
| plot_multiverse | Source code |
| plot_my_auc | Source code |
| plot_sbc_params | Source code |
| pool.auc.mids | Source code |
| pool.oe.mids | Source code |
| pool.validate.mids | Source code |
| posterior_epred.brmshmmfit | Source code |
| posterior_epred_rect | Source code |
| posterior_epred_rect_simulate | Source code |
| posterior_epred_state_prob | Source code |
| posterior_epred_state_prob_internal | Source code |
| posterior_epred_to_predicted | Source code |
| posterior_long_to_df | Source code |
| posterior_predict.brmshmmfit | Source code |
| posterior_rect_to_long | Source code |
| posterior_state_plot | Source code |
| pp_check_last_state | Source code |
| pp_check_state_at | Source code |
| pp_check_transitions | Source code |
| pp_check_transitions_direction | Source code |
| prepare_marker_data_wide | Source code |
| print.summary.brmshmmfit | Source code |
| print_formula | Source code |
| print_hmm_fit_summary | Source code |
| print_hmm_hypothesis_res | Source code |
| progression_sheet | Source code |
| rcppeigen_outerproduct | Source code |
| read_all_multiverse_res | Source code |
| read_data_for_analysis | Source code |
| read_patient_data | Source code |
| read_raw_data | Source code |
| read_special_lab_data | Source code |
| read_special_lab_data_all | Source code |
| remove_names_from_special_lab_data | Source code |
| remove_names_from_special_lab_data_dir | Source code |
| sampling_multi | Source code |
| sampling_multi_noop | Source code |
| sampling_multi_store_file_generator | Source code |
| sbc | Source code |
| stan_checkdivergences | Man page Source code |
| stan_jm_with_cache | Source code |
| sum_percent | Source code |
| summarise_sbc_diagnostics | Source code |
| summary.brmshmmfit | Source code |
| translate_markers | Source code |
| translate_outcomes | Source code |
| translate_patient_columns | Source code |
| translate_progression_columns | Source code |
| update_and_check_version | Source code |
| validate.mids | Source code |
| validate_brmshmmdata | Source code |
| validate_brmshmmfit | Source code |
| validate_id | Source code |
| version_sheet | Source code |
