Files in cas-bioinf/covid19retrospective
What the Package Does (One Line, Title Case)
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/auc_tools.R
R/brms_tools.R
R/brmshmmdata.R
R/brmshmmfit.R
R/covid19retrospective.R
R/data_mapping.R
R/data_preprocessing.R
R/evaluation_tools.R
R/fake_data.R
R/hmm_simulator.R
R/hmm_tools.R
R/hypotheses.R
R/make_stancode_hmm.R
R/make_standata_hmm.R
R/manuscript_tools.R
R/multiverse_tools.R
R/posterior_plots_hmm.R
R/predict_hmm.R
R/raw_data_preprocessing.R
R/risk_scores_tools.R
R/rstanarm_tools.R
R/sampling_multi.R
R/sbc.R
R/special_lab_data.R
R/translation.R
README.md
covid19retrospective.Rproj
data_description.md
dev/fake_data.Rmd
dev/hmm_grein.Rmd
dev/hmm_model_devel.Rmd
dev/raw_data_preprocessing.Rmd
dev/risk_scores_consortium_tests.Rmd
hmm.stan
man/covid19retrospective.Rd
man/fake_data_grein.Rd
man/stan_checkdivergences.Rd
manuscript/Covid19.json
manuscript/all_auc.csv
manuscript/all_auc_orig.csv
manuscript/analysis_brms.Rmd
manuscript/analysis_brms.csv
manuscript/authors.R
manuscript/authors.csv
manuscript/competing_risks.Rmd
manuscript/competing_risks_res.csv
manuscript/data_collection_period.csv
manuscript/descriptive.Rmd
manuscript/ethics.xlsx
manuscript/hmm.Rmd
manuscript/hmm_res.csv
manuscript/jm.Rmd
manuscript/jm_res.csv
manuscript/journal-of-medical-virology.csl
manuscript/manuscript.Rmd
manuscript/output_template.docx
manuscript/plos.csl
manuscript/preamble.tex
manuscript/risk_scores.Rmd
manuscript/single_outcome_coxph.Rmd
manuscript/single_outcome_coxph_res.csv
manuscript/static_figs/hmm_simple.graphml
manuscript/static_figs/hmm_worsening.graphml
manuscript/static_figs/model_states.graphml
manuscript/static_figs/model_states.pdf
manuscript/static_figs/model_states.png
manuscript/static_figs/model_states_hmm.graphml
manuscript/static_figs/model_states_hmm.pdf
manuscript/static_figs/model_states_hmm.png
manuscript/supplementary_figures.Rmd
manuscript/supplementary_statistical_analysis.Rmd
other_outputs/eosinophiles.Rmd
other_outputs/fpv_metaanalysis.Rmd
other_outputs/fpv_only.Rmd
other_outputs/risk_scores_consortium.Rmd
private_data/README.md
public_data/Data_Collection.xlsx
public_data/Data_Collection_Cz.xlsx
public_data/Grein_et_al.xlsx
public_data/Translations.xlsx
public_data/nakazeni-vyleceni-umrti-testy.csv
research_questions.md
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/posterior_epred.cpp
tests/testthat.R
tests/testthat/test-brms_tools.R
tests/testthat/test-posterior_epred.R
