Man pages for casblaauw/phosphocie
Create Continuous Phosphosite Colour Representations
| build_fastas | Create a FASTA file with sequence fragments |
| filter_netphorest | Remove off-target NetPhorest sites |
| filter_phosphosites | Filter phosphosite data to human, uniprot-conformant data |
| fit_transform | Calculate UCIE geometric transformation values |
| get_middle_fragment | Extract middle fragment from each string |
| kinase2cielab | Get kinase score colours based on reference colourspace |
| phosphocie | phosphocie: A package to visualise phosphosite kinase... |
| prep_ucie_data | Check and reformat data for use with U-CIE functions |
| read_kinsub | Read in PhosphoSitePlus kinase substrate data |
| read_ksp | Read in KSP kinase prediction output |
| read_netphorest | Read in NetPhorest prediction output |
| read_phosphosite | Read in PhosphoSitePlus phosphorylation site data |
| retrieve_fastas | Retrieve full protein sequences from UniProt |
| transform_data | Get colours from fitted kinase data |
| write_ksp_input | Create an input file for KSP |
| write_pwm_input | Create an input file for KSP's PWM mode |
