Files in cellmapslab/kimono
Knowledge-guIded Multi-Omic NetOwrk inference
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.ipynb_checkpoints/imputation-checkpoint.R
R/.ipynb_checkpoints/infer_sgl_model-checkpoint.R
R/.ipynb_checkpoints/kimono-checkpoint.R
R/analysis.R
R/create_prior.R
R/imputation.R
R/infer_sgl_model.R
R/kimono.R
R/utility_functions.R
README.md
docs/data/expression.csv
docs/data/mapping_expr.csv
docs/data/mapping_expr_prot.csv
docs/data/phenotype.csv
docs/data/proteome.csv
docs/index.Rmd
docs/index.html
docs/index_files/bootstrap-3.3.5/css/bootstrap-theme.css
docs/index_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/index_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/index_files/bootstrap-3.3.5/css/bootstrap.css
docs/index_files/bootstrap-3.3.5/css/bootstrap.css.map
docs/index_files/bootstrap-3.3.5/css/bootstrap.min.css
docs/index_files/bootstrap-3.3.5/css/cerulean.min.css
docs/index_files/bootstrap-3.3.5/css/cosmo.min.css
docs/index_files/bootstrap-3.3.5/css/darkly.min.css
docs/index_files/bootstrap-3.3.5/css/flatly.min.css
docs/index_files/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/index_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/index_files/bootstrap-3.3.5/css/journal.min.css
docs/index_files/bootstrap-3.3.5/css/lumen.min.css
docs/index_files/bootstrap-3.3.5/css/paper.min.css
docs/index_files/bootstrap-3.3.5/css/readable.min.css
docs/index_files/bootstrap-3.3.5/css/sandstone.min.css
docs/index_files/bootstrap-3.3.5/css/simplex.min.css
docs/index_files/bootstrap-3.3.5/css/spacelab.min.css
docs/index_files/bootstrap-3.3.5/css/united.min.css
docs/index_files/bootstrap-3.3.5/css/yeti.min.css
docs/index_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/index_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/index_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/index_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/index_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/index_files/bootstrap-3.3.5/js/bootstrap.js
docs/index_files/bootstrap-3.3.5/js/bootstrap.min.js
docs/index_files/bootstrap-3.3.5/js/npm.js
docs/index_files/bootstrap-3.3.5/shim/html5shiv.min.js
docs/index_files/bootstrap-3.3.5/shim/respond.min.js
docs/index_files/crosstalk-1.0.0/css/crosstalk.css
docs/index_files/crosstalk-1.0.0/js/crosstalk.js
docs/index_files/crosstalk-1.0.0/js/crosstalk.js.map
docs/index_files/crosstalk-1.0.0/js/crosstalk.min.js
docs/index_files/crosstalk-1.0.0/js/crosstalk.min.js.map
docs/index_files/crosstalk-1.1.1/css/crosstalk.css
docs/index_files/crosstalk-1.1.1/js/crosstalk.js
docs/index_files/crosstalk-1.1.1/js/crosstalk.js.map
docs/index_files/crosstalk-1.1.1/js/crosstalk.min.js
docs/index_files/crosstalk-1.1.1/js/crosstalk.min.js.map
docs/index_files/datatables-binding-0.10/datatables.js
docs/index_files/datatables-binding-0.19/datatables.js
docs/index_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/index_files/dt-core-1.10.19/css/jquery.dataTables.extra.css
docs/index_files/dt-core-1.10.19/css/jquery.dataTables.min.css
docs/index_files/dt-core-1.10.19/js/jquery.dataTables.min.js
docs/index_files/dt-core-1.10.20/css/jquery.dataTables.extra.css
docs/index_files/dt-core-1.10.20/css/jquery.dataTables.min.css
docs/index_files/dt-core-1.10.20/js/jquery.dataTables.min.js
docs/index_files/figure-html/unnamed-chunk-10-1.png
docs/index_files/figure-html/unnamed-chunk-10-2.png
docs/index_files/figure-html/unnamed-chunk-12-1.png
docs/index_files/figure-html/unnamed-chunk-13-1.png
docs/index_files/figure-html/unnamed-chunk-14-1.png
docs/index_files/figure-html/unnamed-chunk-14-2.png
docs/index_files/figure-html/unnamed-chunk-15-1.png
docs/index_files/figure-html/unnamed-chunk-15-2.png
docs/index_files/figure-html/unnamed-chunk-16-1.png
docs/index_files/figure-html/unnamed-chunk-17-1.png
docs/index_files/figure-html/unnamed-chunk-17-2.png
docs/index_files/figure-html/unnamed-chunk-18-1.png
docs/index_files/figure-html/unnamed-chunk-18-2.png
docs/index_files/figure-html/unnamed-chunk-19-1.png
docs/index_files/figure-html/unnamed-chunk-19-2.png
docs/index_files/figure-html/unnamed-chunk-20-1.png
docs/index_files/figure-html/unnamed-chunk-21-1.png
docs/index_files/figure-html/unnamed-chunk-22-1.png
docs/index_files/figure-html/unnamed-chunk-22-2.png
docs/index_files/figure-html/unnamed-chunk-23-1.png
docs/index_files/figure-html/unnamed-chunk-23-2.png
docs/index_files/figure-html/unnamed-chunk-24-1.png
docs/index_files/figure-html/unnamed-chunk-24-2.png
docs/index_files/figure-html/unnamed-chunk-25-1.png
docs/index_files/figure-html/unnamed-chunk-25-2.png
docs/index_files/figure-html/unnamed-chunk-26-1.png
docs/index_files/figure-html/unnamed-chunk-26-2.png
docs/index_files/figure-html/unnamed-chunk-27-1.png
docs/index_files/figure-html/unnamed-chunk-27-2.png
docs/index_files/figure-html/unnamed-chunk-28-1.png
docs/index_files/figure-html/unnamed-chunk-28-2.png
docs/index_files/figure-html/unnamed-chunk-29-1.png
docs/index_files/figure-html/unnamed-chunk-29-2.png
docs/index_files/figure-html/unnamed-chunk-30-1.png
docs/index_files/figure-html/unnamed-chunk-30-2.png
docs/index_files/figure-html/unnamed-chunk-31-1.png
docs/index_files/figure-html/unnamed-chunk-32-1.png
docs/index_files/figure-html/unnamed-chunk-32-2.png
docs/index_files/figure-html/unnamed-chunk-34-1.png
docs/index_files/figure-html/unnamed-chunk-5-1.png
docs/index_files/figure-html/unnamed-chunk-6-1.png
docs/index_files/figure-html/unnamed-chunk-8-1.png
docs/index_files/figure-html/unnamed-chunk-9-1.png
docs/index_files/highlightjs-9.12.0/default.css
docs/index_files/highlightjs-9.12.0/highlight.js
docs/index_files/highlightjs-9.12.0/textmate.css
docs/index_files/htmlwidgets-1.5.1/htmlwidgets.js
docs/index_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/index_files/jquery-1.12.4/LICENSE.txt
docs/index_files/jquery-1.12.4/jquery.min.js
docs/index_files/jquery-3.6.0/jquery-3.6.0.js
docs/index_files/jquery-3.6.0/jquery-3.6.0.min.js
docs/index_files/jquery-3.6.0/jquery-3.6.0.min.map
docs/index_files/jqueryui-1.11.4/README
docs/index_files/jqueryui-1.11.4/images/ui-icons_444444_256x240.png
docs/index_files/jqueryui-1.11.4/images/ui-icons_555555_256x240.png
docs/index_files/jqueryui-1.11.4/images/ui-icons_777620_256x240.png
docs/index_files/jqueryui-1.11.4/images/ui-icons_777777_256x240.png
docs/index_files/jqueryui-1.11.4/images/ui-icons_cc0000_256x240.png
docs/index_files/jqueryui-1.11.4/images/ui-icons_ffffff_256x240.png
docs/index_files/jqueryui-1.11.4/index.html
docs/index_files/jqueryui-1.11.4/jquery-ui.css
docs/index_files/jqueryui-1.11.4/jquery-ui.js
docs/index_files/jqueryui-1.11.4/jquery-ui.min.css
docs/index_files/jqueryui-1.11.4/jquery-ui.min.js
docs/index_files/jqueryui-1.11.4/jquery-ui.structure.css
docs/index_files/jqueryui-1.11.4/jquery-ui.structure.min.css
docs/index_files/jqueryui-1.11.4/jquery-ui.theme.css
docs/index_files/jqueryui-1.11.4/jquery-ui.theme.min.css
docs/index_files/navigation-1.1/codefolding.js
docs/index_files/navigation-1.1/sourceembed.js
docs/index_files/navigation-1.1/tabsets.js
docs/index_files/tocify-1.9.1/jquery.tocify.css
docs/index_files/tocify-1.9.1/jquery.tocify.js
docs/intro.png
docs/logo.png
docs/style.css
kimono.Rproj
man/create_prior_network.Rd
man/kimono.Rd
man/load_mapping.Rd
man/plot_kimono.Rd
man/to_igraph.Rd
