| baseVtotal_plot | Percent contribution of base peak intensity to total ion... |
| createReport | Title |
| figure1 | figure 1 |
| figure2 | figure2 |
| getBpc | Get the Base Peak Chromatogram intensities for a given... |
| getMzPointer | Creates an mzR object |
| getTic | Get the total ion chromatogram intensities for a given... |
| ms1PeaksVsTimePlot | Retention time vs precursorMZ |
| ms2EvalPlot | ms2Eval |
| precEvalMs1Plot | precEvalMs1Plot |
| precEvalMs2Plot | precEvalMs1Plot |
| prepForPlotly | Prepare mzR header data for plotly |
| readMzSpec | Get mzR header data from selected mzXML file |
| relativateTotalAndBase | For y-axis scaling |
| rtVsBaseMzPlot | Retention time vs precursorMZ |
| rtVsPrecMzPlot | Retention time vs precursorMZ |
| ticBpcPlot | TIC and BPC plot |
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