Files in chiragjp/quantvoe
Modeling vibrational effects in observational data
DESCRIPTION
LICENSE
Meta/vignette.rds
NAMESPACE
R/check_data_pre_pipeline.R
R/compute_associations.R
R/compute_metaanalysis.R
R/compute_vibrations.R
R/summarize_linear_output.R
R/voe_pipeline.R
README.md
data/.Rhistory
data/nhanesToyDataset.rda
doc/quantvoe_vignette1.R
doc/quantvoe_vignette1.Rmd
doc/quantvoe_vignette1.html
images/FIG2_voe_examples.png
images/FIG_overview.png
images/FIG_perf.png
images/LBXTC_physical_activity.png
inst/extdata/example_data_dataset_1_dependent_systolic.rds
inst/extdata/example_data_dataset_1_dependent_systolic_bmi.rds
inst/extdata/example_data_dataset_1_independent.rds
inst/extdata/example_data_dataset_2_dependent_systolic.rds
inst/extdata/example_data_dataset_2_dependent_systolic_bmi.rds
inst/extdata/example_data_dataset_2_independent.rds
man/analyze_voe_data.Rd
man/clean_metaanalysis.Rd
man/compute_initial_associations.Rd
man/compute_metaanalysis.Rd
man/compute_vibrations.Rd
man/dataset_vibration.Rd
man/dependent_toy_dataset1_nhanes.Rd
man/dependent_toy_dataset2_nhanes.Rd
man/filter_unnest_feature_vib.Rd
man/find_confounders_linear.Rd
man/full_voe_pipeline.Rd
man/get_adjuster_expanded_vibrations.Rd
man/get_converged_metadfs.Rd
man/get_summary_stats.Rd
man/independent_toy_dataset1_nhanes.Rd
man/independent_toy_dataset2_nhanes.Rd
man/meta_analysis_command.Rd
man/pre_pipeline_data_check.Rd
man/regression.Rd
man/run_associations.Rd
man/summarize_vibration_data_by_feature.Rd
man/vibrate.Rd
manuscript/figures/FIG1_overview.pdf
manuscript/figures/FIG2_benchmarking.pdf
manuscript/figures/FIG3_voe_examples.pdf
manuscript/figures/FIG4_voe_heart_output.pdf
manuscript/figures/FIG5_janus_effect_modeling.pdf
manuscript/manuscript_data/benchmark.sh
manuscript/manuscript_data/format_ukb_covid_data.R
manuscript/manuscript_data/get_all_nhanes_questions_diet_labs.rds.R
manuscript/manuscript_data/get_bone_density_data.R
manuscript/manuscript_data/get_glucose_data.R
manuscript/manuscript_data/get_lisinopril.R
manuscript/manuscript_data/get_opthamology_data.R
manuscript/manuscript_data/get_sys_ldl_tchol_bmi.R
manuscript/manuscript_data/get_thyroid.R
manuscript/manuscript_data/parse_benchmarking_data.R
manuscript/manuscript_data/run_nhanes_analysis.sh
manuscript/manuscript_data/run_ukb_analysis.sh
manuscript/voe_pipeline_figs.Rmd
tests/.DS_Store
tests/successful_test_output_1.png
tests/successful_test_output_2.png
tests/testthat.R
tests/testthat/.DS_Store
tests/testthat/.Rhistory
tests/testthat/abundance_data_for_test.rds
tests/testthat/ag_data_for_nb_test.rds
tests/testthat/metadata_ag_fecal_for_test.rds
tests/testthat/metadata_for_test.rds
tests/testthat/nhanes_dep_data.rds
tests/testthat/nhanes_ind_data.rds
tests/testthat/sample_association_output.rds
tests/testthat/test-compute_associations.R
tests/testthat/test-compute_metaanalysis.R
tests/testthat/test-compute_vibrations.R
tests/testthat/test-voe_pipeline.R
vignettes/quantvoe_vignette1.Rmd
voe_command_line_deployment.R
