API for chrismckennan/MSeQUiP
Quantifying uncertainty in peptide-spectrum matches
| Global functions | |
|---|---|
| AnalyzeSimulatedData | Man page Source code |
| AnalyzeSimulatedData.0 | Source code |
| Bin.prob | Source code |
| BoxPlot.Incorrect | Source code |
| Calibrate.PProb | Source code |
| Change.pi0 | Source code |
| Clean.Database.sim | Source code |
| Clean.prosit | Source code |
| Combine.Charge | Source code |
| Combine.Pprob | Source code |
| Combine.Results.DB | Source code |
| Create.Decoy.Database | Source code |
| Deisotope | Man page Source code |
| Deisotope.workhorse | Source code |
| Delta.Mass | Source code |
| Expit | Source code |
| Find.Range | Source code |
| FindMatch | Source code |
| Fragment.Profiles | Source code |
| GLM.noise.map | Source code |
| Get.Ion.Frac | Source code |
| Get.Random.Scans | Source code |
| Get.True.Indices | Source code |
| GetInt0Info | Source code |
| Grad.Func.y1 | Source code |
| Grad.Log.Func | Source code |
| Hess.Func.y1 | Source code |
| Hess.Log.Func | Source code |
| Hist.Noise | Source code |
| Int.Noise.int | Source code |
| Int0.Obs.score | Source code |
| Like.int | Source code |
| Like.int.y1 | Source code |
| Log.Func | Source code |
| Log.Func.y1 | Source code |
| Logit.RT | Source code |
| Map.IDs | Source code |
| Mass.Accuracy.match | Source code |
| Mass.Accuracy.noise | Source code |
| Mass.Accuracy.score | Source code |
| Match.Prec | Source code |
| Mono.profiles | Source code |
| Penalized.grad | Source code |
| Penalized.log.like | Source code |
| PerformSearch | Man page Source code |
| Prec.ions | Source code |
| Precursor.Isotope | Source code |
| Prob.random.match | Source code |
| Prune.data.which | Source code |
| Prune.database | Source code |
| Prune.database.list | Source code |
| Prune.database.sub | Source code |
| Prune.spectra | Source code |
| Prune.spectra.sub | Source code |
| Pvalue | Source code |
| RT.score | Source code |
| Random.null | Source code |
| Read.AbsentIons | Source code |
| Read.BYMA | Source code |
| Read.BYint | Source code |
| Read.BYobs | Source code |
| Read.NoiseInt | Source code |
| Read.NoiseMA | Source code |
| Read.NoiseObs | Source code |
| Read.RT | Source code |
| ReadSplineFile | Source code |
| Remove.signal | Source code |
| Results.Other | Source code |
| SQRT.mat | Source code |
| Score.PSM | Source code |
| Sim.Mu | Source code |
| Sim.RT | Source code |
| Sim.Tdist | Source code |
| Simulate.mz | Source code |
| SimulateData.Null | Source code |
| SimulateData.new | Source code |
| SimulateDataPaper | Man page Source code |
| by.score.abundance | Source code |
| by.score.abundance2 | Source code |
| by.score.observed | Source code |
| int.f | Source code |
