Files in chuangaocornell/gtx2

Genetics ToolboX

R/abf.R R/blat.R R/blockassoc.R R/clinical.R R/demographics.R R/fitmix.R R/fixna.R R/gene.R R/glsglm.R R/grs.R R/hapmap.R R/input.R R/kmplot.R R/manhattan.R R/mincover.R R/moments2.R R/mps.R R/mpssurv.R R/multimatch.R R/multipheno.R R/otplot.R R/pcaplot.R R/pgx.R R/pipeline.R R/pipeline.postanalysis.R R/plantation.R R/plotutils.R R/power.R R/qq10.R R/qtplot.R R/regionplot.R R/snpdata.R R/snphwe.R R/ssm.R R/stepwise.R R/testsummary.R R/text.R R/transform.R R/waterfall.R inst/templates/gtxpipe-report-negative.Rmd man/Surv2.Rd man/abf.Wakefield.Rd man/abf.normal.Rd man/abf.t.Rd man/adiponectin.scores.Rd man/agtstats.Rd man/align.snpdata.coding.Rd man/allelesAB.Rd man/aoex1.Rd man/binarise.Rd man/blockassoc.Rd man/bp.scores.Rd man/cad.scores.Rd man/chi2ncp.Rd man/clinex.Rd man/clinical.derive.Rd man/clinical.import.Rd man/coeff.extract.Rd man/combine.moments2.Rd man/contrasting.rainbow.Rd man/demographics.Rd man/derivation.add.Rd man/derivations.standard.IDSL.Rd man/derivations.standard.Rd man/est.moments2.Rd man/finitise.Rd man/fitmix.Rd man/fitmix.plot.Rd man/fitmix.r2.Rd man/fitmix.simulate.Rd man/fixNA.Rd man/fupower.Rd man/gclambda.Rd man/gencode14.UGT1A1.Rd man/gene.Rd man/gls.approx.logistic.Rd man/grade.Rd man/grs.filter.Qrs.Rd man/grs.make.scores.Rd man/grs.onesnp.apply.Rd man/grs.plot.Rd man/grs.summary.Rd man/gtx-package.Rd man/gtx.params.Rd man/gtx.version.Rd man/gtxpipe.Rd man/hapmap.read.haplotypes.Rd man/hapmap.snpdata.Rd man/height.scores.Rd man/ile.Rd man/kmplot.Rd man/landmark.Rd man/lipid.cad.scores.Rd man/lipid.scores.Rd man/liver.scores.Rd man/lm.moments2.Rd man/magic.scores.Rd man/make.moments2.Rd man/manhattan.Rd man/mincover.Rd man/mlog10p.Rd man/moments2.Rd man/mps.driver.Rd man/mps.simple.Rd man/mthfrex.Rd man/multimatch.Rd man/multipheno.OBrien.Rd man/multipheno.T2.Rd man/n.extract.Rd man/otplot.Rd man/parse.snps.Rd man/pcaplot.Rd man/pgx.endpoints.Rd man/pgx.exposure.Rd man/pgx.trtreat.Rd man/plantation.Rd man/plotpos.by.chr.Rd man/positivise.Rd man/prettye.Rd man/prettypc.Rd man/prune.distance.Rd man/prune.genes.Rd man/qq10.Rd man/qtplot.Rd man/read.snpdata.impute.Rd man/read.snpdata.mach.Rd man/read.snpdata.minimac.Rd man/read.snpdata.plink.Rd man/remap.q2t.Rd man/replaceNA.Rd man/safe.Rd man/sanitise.whitespace.Rd man/snpdata.Rd man/snphwe.Rd man/snphweCounts.Rd man/snps.BRCA1.Rd man/stepdown.moments2.Rd man/stepup.moments2.Rd man/t2d.scores.Rd man/t2dex.Rd man/test.extract.Rd man/test.subsample.Rd man/text2factor.Rd man/textgrid.Rd man/tokenise.whitespace.Rd man/trial.params.Rd man/twopq.Rd man/valuesof.Rd man/waterfall.Rd man/zise.Rd vignettes/demographics.Rmd