API for chutter/MitoCap
Package For extracting, assembling, annotating and aligning mitochondrial genomes from high-throughput sequencing data
| Global functions | |
|---|---|
| alignMitogenomes | Man page Source code |
| annotateMitoContigs | Man page Source code |
| barcodeSampleScan | Source code |
| buildMitogenomes | Man page Source code |
| buildReference | Source code |
| findORF | Man page Source code |
| isCircularGenome | Man page Source code |
| iterativeAssemble | Man page Source code |
| makeReference | Man page |
| markerAlignment | Man page Source code |
| mitochondrialCapture | Man page Source code |
| prepareAlignments | Man page Source code |
| removeOffTarget | Man page Source code |
| runCap3 | Man page Source code |
| runSpades | Source code |
| setupCheck | Source code |
| tRNAscan | Man page Source code |
| tRNAscanBatch | Man page Source code |
| trimMitoAlignments | Man page Source code |
