chutter/MitoCap
Package For extracting, assembling, annotating and aligning mitochondrial genomes from high-throughput sequencing data

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chutter/MitoCap: Package For extracting, assembling, annotating and aligning mitochondrial genomes from high-throughput sequencing data
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Man pages for chutter/MitoCap
Package For extracting, assembling, annotating and aligning mitochondrial genomes from high-throughput sequencing data

alignMitogenomesalignMitogenomes
annotateMitoContigsannotateMitoContigs
buildMitogenomesbuildMitogenomes
findORFfindORF
isCircularGenomeisCircularGenome
iterativeAssembleiterativeAssemble
makeReferencemakeReference
markerAlignmentmarkerAlignment
mitochondrialCapturemitochondrialCapture
prepareAlignmentsprepareAlignments
removeOffTargetremoveOffTarget
runCap3runCap3
trimMitoAlignmentstrimMitoAlignments
tRNAscantRNAscan
tRNAscanBatchtRNAscanBatch
chutter/MitoCap documentation built on July 17, 2025, 12:04 a.m.

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