Man pages for clarkevansteenderen/BinMat_R
Processes Binary Data Obtained from Fragment Analysis (Such as AFLPs, ISSRs, and RFLPs)
| BinMatInput_ordination | Example input data containing a consolidated binary matrix... |
| BinMatInput_reps | Example input data containing a binary matrix comprising... |
| bunias_orientalis | Example input file of Bunias orientalis AFLP data, taken from... |
| check.data | Checks binary matrix for unwanted characters. |
| consolidate | Consolidates replicate pairs in a binary matrix. |
| errors | Calculates Jaccard and Euclidean error rates. |
| group.names | Outputs group names specified in the input file for the... |
| nmds | Creates a non-metric multidimensional scaling plot (nMDS). |
| nymphaea | Example input file of Nymphaea ISSR data, taken from Reid et.... |
| peak.remove | Removes samples with peaks equal to or less than a specified... |
| peaks.consolidated | Calculates peak numbers for a consolidated data set (total,... |
| peaks.original | Calculates peak numbers for the data set with all replicates... |
| scree | Draws a scree plot. |
| shepard | Creates a shepard plot. |
| upgma | Draws a hierarchical clustering tree (UPGMA). |
