Man pages for clayton33/csasMarPhys
DFO Maritimes Physical Oceanography CSAS analysis
| annualAnomaly | Calculate annual anomaly values |
| annualMeanCutSplit | Calculate annual mean |
| annualNormalizedAnomaly | Calculate normalized annual anomaly values |
| anomalyColors | Anomaly colours |
| approxPressureCtd | Linearly interpolate a CTD object in pressure space. |
| areaClimatologies1980to2010 | Climate area climatologies |
| areaDepthBins | Area standard depth bins |
| areaMonthlyTimeseries | Climate area monthly timeseries |
| as.oax | Format CTD for input into optimal estimation routine |
| averageCtds | Average a list of CTD objects. |
| binArea | Calculate the approximate area for specified bins |
| binMeanPressureCtd | Bin-average a CTD object in pressure space. |
| brownsBankPolygon | Browns bank polygon |
| brownsBankStationPolygons | Browns bank station polygon's |
| cabotStraitPolygon | Cabot strait polygon |
| cabotStraitStationPolygons | Cabot strait station polygon's |
| calculateMixedLayerDepth | Calculate mixed layer depth |
| calculateStratificationIndex | Calculate stratification index |
| checkCurrentTimeForClimateSummary | Check current time |
| cilVolume | Calculate cold intermediate layer thickness |
| climatePolygonArea | Climate area polygon areas |
| climatePolygons | Climate area polygons |
| climateSummary2ahccd | Convert monthly climate data to ahccd format |
| combineAhccdAndClimateSummary | Combine ahccd and climate summary data |
| createOaxDeckfile | Create deckfile for OAX |
| densityGradientMonthlyClimatology1981to2010 | Density gradient monthly climatology 1981 to 2010 |
| densityGradientWeightedAnomaly | Density gradient weighted anomaly |
| download.ahccd | Download temperature AHCCD data files |
| download.climateSummaries | Download a Cache a Met Climate Summary File |
| download.ghcn | Download temperature GHCN data files |
| download.meds | Download MEDS data |
| download.met.climateSummaries | Download and Cache a Met Climate Summary File |
| download.nao | Download and Cache the North Atlantic Oscillation data |
| download.nefsc | Download NODC NEFSC data |
| download.nefsc.erddap | Download NODC NEFSC data from erddap server |
| download.neracoos.buoy | Download NERACOOS buoy CTD data |
| download.seabass.glider | Download SeaBASS Glider data |
| findBottomDepthIndex | Find bottom depth index for given list of longitude,... |
| findValidSnowCrabGridPoints | Find valid snow crab oax grid points |
| getAnomalyLabel | Provide axis names for anomaly labels |
| getData | Get data translation |
| getLabel | Provide names for various labels |
| getLocationName | Provide labels for locations. |
| getMetadata | Get metadata translation |
| getNumber | Provide written value for numbers up to 10. |
| getOrdinal | Provide ordinal value for numbers up to 10. |
| getShipnameLong | Get the long name of a ship abbreviation |
| getTransectAngle | Get transect angle |
| getUnit | Get unit translation |
| halifaxExtendedPolygon | Halifax extended polygon |
| halifaxExtendedStationPolygons | Halifax station polygon's |
| halifaxPolygon | Halifax polygon |
| halifaxStationPolygons | Halifax station polygon's |
| identifyMissingAhccd | Find missing air temperature data |
| join.ghcn | Join GHCN station data |
| laHaveBankPolygon | La Have Bank polygon |
| laHaveBankStationPolygons | La Have Bank station polygon's |
| laurentianChannelMouthPolygon | Laurentian Channel Mouth polygon |
| laurentianChannelMouthStationPolygons | Laurentian Channel Mouth station polygon's |
| louisbourgPolygon | Louisbourg polygon |
| louisbourgStationPolygons | Louisbourg channel station polygon's |
| makeCruiseMapTitle | Make cruise map title |
| makeGridMask | Create a grid mask |
| makeSectionPlotTitle | Make section plot title |
| mapAhccdStationHeader | Map AHCCD station column names |
| monthlyAnomaly | Caclulate monthly anomaly values |
| monthlyClimatology | Calculate monthly climatology |
| monthlyMeanCutSplit | Calculate monthly mean |
| monthlyNormalizedAnomaly | Caclulate monthly normalized anomaly values |
| monthlyStandardDeviation | Calculate monthly climatology standard deviation |
| nafoZones | NAFO zones for Maritimes regions |
| northeastChannelPolygon | North east channel polygon |
| northeastChannelStationPolygons | North east channel station polygon's |
| paletteCalculations | palette calculations |
| plotAnnualAnomaly | Plot annual time series |
| plotMonthlyAnomaly | Plot monthly time series |
| plotMonthlyBar | Plot monthly bar plots |
| plotMonthlyTimeseriesWAnomalyBar | Plot monthly timeseries with anomaly bar |
| plotStackedBarplot | Plot annual stacked bar plot |
| plotStationLocations | Plot station locations |
| portsmouthPolygon | Portsmouth polygon |
| portsmouthStationPolygons | Portsmouth station polygon's |
| presentTime | Get the present time, in a stated timezone |
| prince5Climatology1980to2010 | Prince 5 climatology |
| prince5depthBins | Prince 5 standard depth bins |
| prince5monthlyData | Prince 5 monthly data |
| read.ahccd | Read AHCCD data |
| read.ahccd.stations | Read AHCCD station data file |
| read.climateSummaries.xml | Read met xml climate summary file |
| read.ghcn | Read in ghcn data |
| read.gliderDat | Read .dat glider data |
| read.meds | Read MEDS data |
| read.minilog | Read Vemco minilog file |
| read.nao | Read North Atlantic Oscillation Index file |
| read.nefsc | Read NEFSC hydrographic data |
| read.nefsc.erddap.nc | Read NODC NEFSC Profile data |
| read.neracoos.buoy | Read NERACOOS buoy data |
| read.seabass.glider | Read SeaBASS glider data |
| read.sealevel2 | Read sea level data |
| read.sealogT | Read sealog-T file |
| read.stAndrewsTemperature | Read non-archived St.Andrews moored temperature data |
| rosewayPolygon | Roseway polygon |
| rosewayStationPolygons | Roseway station polygon's |
| rotateAxes | Rotate axes |
| rotateAxesTrueNorth | Rotate axes clockwise from true north |
| sableIslandBankNewPolygon | Sable Island Bank New polygon |
| sableIslandBankNewStationPolygons | Sable Island Bank New station polygon's |
| sableIslandBankPolygon | Sable Island Bank polygon |
| sableIslandBankStationPolygons | Sable Island Bank station polygon's |
| sableIslandBankWestEastStationPolygons | Sable Island Bank West-East station polygon's |
| shelfSurveyInterpBarnes | Shelf survey barnes interpolation method |
| snowCrabLonLatGrid | Snow crab longitude latitude grid. |
| snowCrabOaxResults | Snow crab optimal estimation results |
| snowCrabUtmGrid | Snow crab utm grid. |
| sstInSituHalifax | Sea surface temperature in-situ for Halifax site |
| sstInSituPolygons | Sea surface temperature in-situ polygons for two sites |
| sstInSituStAndrews | Sea surface temperature in-situ for St.Andrews site |
| sstSatelliteNafoZones | Sea-surface temperature NAFO zones for Maritimes regions |
| stAnnsBankPolygon | St.Anns Bank polygon |
| stAnnsBankStationPolygons | St.Anns Bank station polygon's |
| station2Climatology1980to2010 | Station 2 climatology |
| station2DepthBins | Station 2 standard depth bins |
| station2monthlyData | Station 2 monthly data |
| station2PlotLimits | Station plot limits |
| station2Polygon | Station 2 polygon |
| stPierreBankPolygon | St.Pierre Bank polygon |
| stPierreBankStationPolygons | St.Pierre Bank station polygon's |
| summerGroundfishCilGrid | Summer groundfish cold intermediate layer (cil) grid. |
| summerGroundfishClimatology1980to2010 | Summer groundfish optimal estimation climatology |
| summerGroundfishGrid | Summer groundfish grid. |
| summerGroundfishLonLatGrid | Summer groundfish longitude latitude grid. |
| summerGroundfishOaxCtdInput | Summer groundfish optimal estimation ctd input |
| summerGroundfishOaxNafoPolygons | Summer groundfish NAFO region boundaries for oax grid |
| summerGroundfishOaxResults | Summer groundfish optimal estimation results |
| summerGroundfishOaxResultsForCIL | Summer groundfish optimal estimation results to use for cold... |
| summerGroundfishPlotLimits | Summer groundfish map plot limits |
| summerGroundfishStandardDepths | Summer groundfish standard grid depths. |
| summerGroundfishUtmGrid | Summer groundfish utm grid. |
| summerGroundfishXg | Summer groundfish xg for input into barnes interpolation. |
| summerGroundfishYg | Summer groundfish yg for input into barnes interpolation. |
| swSatO2 | Saturation of O2 in sea water |
| theGullyNewPolygon | The Gully polygon |
| theGullyNewStationPolygons | The Gully station polygon's |
| theGullyPolygon | The Gully polygon |
| theGullyStationPolygons | The Gully station polygon's |
| transectClimatology1980to2010 | Transect 1980 to 2010 climatology |
| transectDefinitions | Transect definitions |
| transectDepthBins | Transect standard depth bins |
| transectDistanceBins | Transect distance bins |
| transectPlotLimits | Transect plot limits |
| transectPoly | Make a transect polygon |
| weightedArea | Calculate weighted area for binned data |
| winterGroundfishClimatology1980to2010 | Winter groundfish optimal estimation climatology |
| winterGroundfishGrid | Winter groundfish grid. |
| winterGroundfishGridOld | Winter groundfish grid. |
| winterGroundfishLonLatGrid | Winter groundfish longitude latitude grid. |
| winterGroundfishOaxCtdInput | Winter groundfish optimal estimation ctd input |
| winterGroundfishOaxResults | Winter groundfish optimal estimation results |
| winterGroundfishPlotLimits | Winter groundfish map plot limits |
| winterGroundfishStandardDepths | Winter groundfish standard grid depths. |
| winterGroundfishUtmGrid | Winter groundfish utm grid. |
| winterGroundfishXg | Winter groundfish xg for input into barnes interpolation. |
| winterGroundfishYg | Winter groundfish yg for input into barnes interpolation. |
| writeProductData | Write data product output |
| yarmouthPolygon | Yarmouth polygon |
| yarmouthStationPolygons | Yarmouth station polygon's |
