Files in clsong/ReproduceChickenEgg
Reproduce the figures in Song et al., Generalism drives abundance: a computational causal discovery approach, 2022.

.Rbuildignore
.Rhistory (Mac-mini's conflicted copy 2022-04-09)
.github/workflows/r.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/Appendix_A.R R/Appendix_B.R R/Appendix_C.R R/Appendix_D.R R/Appendix_F.R R/Appendix_G.R R/Appendix_H.R R/Figure2.R R/Figure3.R R/Figure4.R R/function_normalize.r R/package_dependency.R R/process_data.R R/utils-pipe.R README.Rmd README.md
ReproduceChickenEgg.Rproj
data/abundance.rda
data/df.rda
data/df_NODF.rda
data/df_binarized.rda
data/df_normalized.rda
data/df_pca.rda
data/df_statistics.rda
data/environment_variability.rda
data/location.rda
data/networks.rda
data/networks/Bugoni_NSV.txt
data/networks/Bugoni_pampa.txt
data/networks/Lara.txt
data/networks/Licleia_camporupestre.txt
data/networks/Maglianesi_high.txt
data/networks/Maglianesi_low.txt
data/networks/Maglianesi_mid.txt
data/networks/Malucelli.txt
data/networks/Pachuca.txt
data/networks/Picinguaba_cambuca.txt
data/networks/Picinguaba_farinha.txt
data/networks/Picinguaba_fazenda.txt
data/networks/Quindio.txt
data/networks/Rocca.txt
data/networks/Tinoco_cattle.txt
data/networks/Tinoco_forest.txt
data/networks/Tinoco_shrubs.txt
data/networks/Vasconcelos.txt
data/networks/aline_coelho.txt
data/networks/araujo_pantanal.txt
data/networks/biotropica.txt
data/networks/cotton.txt
data/networks/lasprilla.txt
data/networks/machado_caatinga.txt
data/networks/machado_cerrado_ralo.txt
data/p_value.rda
data/species_info.rda
man/figures/README-unnamed-chunk-2-1.png
man/get_df.Rd man/get_df_NODF.Rd man/get_df_binarized.Rd man/get_df_normalized.Rd man/get_df_pca.Rd man/get_df_statistics.Rd man/get_environment_variability.Rd man/normalize.Rd man/pipe.Rd man/plot_figure_2.Rd man/plot_figure_3.Rd man/plot_figure_4.Rd man/plot_figure_S1.Rd man/plot_figure_S13.Rd man/plot_figure_S15.Rd man/plot_figure_S16.Rd man/plot_figure_S17.Rd man/plot_figure_S18.Rd man/plot_figure_S2.Rd man/plot_figure_S4.Rd man/plot_figure_S5.Rd man/plot_figure_S6.Rd man/plot_figure_S7.Rd man/plot_figure_S8.Rd man/plot_figure_S9.Rd man/plot_table_S1.Rd
clsong/ReproduceChickenEgg documentation built on Oct. 20, 2022, 8:59 p.m.