Man pages for clsong/ReproduceChickenEgg
Reproduce the figures in Song et al., Generalism drives abundance: a computational causal discovery approach, 2022.
| get_df | the key tibble with the network information |
| get_df_binarized | Binarize generalization and abundance |
| get_df_NODF | get NODF_c in the networks |
| get_df_normalized | Normalize generalism and abundance |
| get_df_pca | To do PCA analysis in Appendix E |
| get_df_statistics | get key statistics |
| get_environment_variability | get environmental information |
| normalize | Normalize function |
| pipe | Pipe operator |
| plot_figure_2 | Reproduce Figure 2 (note that the reproduced figure lacks... |
| plot_figure_3 | Reproduce Figure 3 (note that the reproduced figure lacks... |
| plot_figure_4 | Reproduce Figure 4 (note that the reproduced figure lacks... |
| plot_figure_S1 | Reproduce Figure S1 |
| plot_figure_S13 | Reproduce Figure S13 (note that the reproduced figure lacks... |
| plot_figure_S15 | Reproduce Figure S15 |
| plot_figure_S16 | Reproduce Figure S16 |
| plot_figure_S17 | Reproduce Figure S17 |
| plot_figure_S18 | Reproduce Figure S18 |
| plot_figure_S2 | Reproduce Figure S2 |
| plot_figure_S4 | Reproduce Figure S4 |
| plot_figure_S5 | Reproduce Figure S5 |
| plot_figure_S6 | Reproduce Figure S6 |
| plot_figure_S7 | Reproduce Figure S7 |
| plot_figure_S8 | Reproduce Figure S8 |
| plot_figure_S9 | Reproduce Figure S9 |
| plot_table_S1 | Reproduce Table S1 |
