API for cnsb-boston/Omics_Notebook
What the package does (short line)
| Global functions | |
|---|---|
| batchUniprotIDmap | Source code |
| blank_results | Source code |
| checkColor | Source code |
| contrast_secondary | Source code |
| drawEnrichment | Source code |
| drawHeatmaps | Source code |
| drawMDPlot | Source code |
| drawPCA | Source code |
| drawRange | Source code |
| drawUMAP | Source code |
| drawVPlots | Source code |
| drawVenn | Source code |
| drawVolcano | Source code |
| drawXYCorr | Source code |
| drawcorplot | Source code |
| fttable | Source code |
| g.abundance.gsea | Source code |
| g.activepath | Source code |
| g.boxplots | Source code |
| g.check.dep | Source code |
| g.combine.met | Source code |
| g.combine.rnk | Source code |
| g.cor.across.groups | Source code |
| g.corplot | Source code |
| g.de.static.heatmap | Source code |
| g.enrichmentmap | Source code |
| g.enrichr | Source code |
| g.fc | Source code |
| g.gsea | Source code |
| g.gsea.combined.contrast | Source code |
| g.gsea.custom | Source code |
| g.gsea.momenta | Source code |
| g.gsea.prep | Source code |
| g.heatmap.static | Source code |
| g.interactive.heatmap | Source code |
| g.interactive.volcano | Source code |
| g.ksea | Source code |
| g.limma | Source code |
| g.make.contrasts | Source code |
| g.make.omicsList | Source code |
| g.md | Source code |
| g.metabo.enrich | Source code |
| g.momenta | Source code |
| g.mumm2omicsList | Source code |
| g.norm | Source code |
| g.norm.to.first | Source code |
| g.norm.vis | Source code |
| g.notebook.setup | Source code |
| g.param.gsea.data | Source code |
| g.param.norm | Source code |
| g.run.deps | Source code |
| g.save.data.qc | Source code |
| g.savedata | Source code |
| g.use.site.norm | Source code |
| g.varplot | Source code |
| g.venn | Source code |
| g.volcano | Source code |
| g_legend | Source code |
| gen_gsea_file | Source code |
| genfile | Source code |
| get.data.fileconn | Source code |
| get.data.filename | Source code |
| getLabelVars | Source code |
| getUniprotAnnotation | Source code |
| get_res | Source code |
| gsea_ranked_data | Source code |
| intensityNorm | Source code |
| interactiveHeatmap | Source code |
| interactiveVolcano | Source code |
| makeEset | Source code |
| merge.lists | Source code |
| print.ON | Source code |
| saveFiles | Source code |
| setup_analysis_dir | Source code |
| summary.ON | Source code |
| timetable | Source code |
| ttable | Source code |
| variationPlot | Source code |
| writeDataToSheets | Source code |
| write_gsea_data | Source code |
